LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco03g1942	ATGGATTGTTTCCCATGTTGCAATAAGCATGACCTTGAAACGGTTCCTTTGAGAAGAAAATCCATTGATTATGCAAATTCCAGGAAATCCACTTTCAGATCTTTTCTTGGGGCTCTCTCTTCCAAAACAGGCAGCAGCAGACAAAGACACATTAAAGCTGAGATAAGAAAATATGGAACAGCGAAGAACGATGTGCGAATCTTCACAGTTCAAGAACTGGCCTCTGCAACTGACAACTTCAGTCCTGACGGTTTGATCGGTGAAGGTGGTTTTGGCAGGGTCTACAAAGGATACTTACAAAGCATTGATCAAGCTGTGGCTGTGAAGCGACTGGACAGGAATAGATTGCAAGGAAGTAGAGAATTCTTTTCAGAAGTAATAACGTTGACTTTGGTGAAGCACCCCAACCTCGTCAAGCTCATAGGTTATTGTGTCGAAGGAGATCAAAAGATGTTGGTTTATGAATTGATGGTCAATGGCAGCCTCGAAAGTCACCTTCTAGATTTAGAAGCTGATAAGGAGGGACTGGATTGGGAAACGAGGATGAAAATAGCAGAAGGAGCAGCGAGAGGATTAGCGTATCTGCATGAAGAAGCAGATCCACCCATAATATACAGAGACTTGAAGGCATCCAACATACTTTTAGATGAGAACTTCAATGTGAAGCTATCAGATTTTGGGCTGGCCAAGATGGGACCCACAGAAGAAGGAAAAGACCATGTGTCCACCAGGGTGATGGGCACTTTTGGGTATTGTTCACCTGAGTATGCTTTGACGGGTCGGGTCACTACCAAGTCCGATGTTTATAGCTTTGGAGTGGTGTTAATGGAGATCATCACCGGAAGAAGAGTCTATGATACTTGTAGAGCAGAAGAAGAGCAATTCCTTATTGACTGGGCACAGCCACTGCTAGAGGACAGAGAGAAGTTCACACTAATGGCAGATCCATTGTTAAAGGATAAATTCCCAGTGAAGGGACTGTTCAAAGCACTTGCAGTGGCAGCCATGTGTCTGGAAGAAGAAGCAGACACAAGACCTTTAATGAGTGATGTAGTAACAGCGCTTCAGCACATTATGATCCCAGTAAAAAATAATGGTGAATTAAACAAAGGAGAATCTGTAAAAATTGCAGGCCATGTTGAGTCATTTAGGATAGGAAGCTCACGTGTAGACAACAACAATAATCTACAACATCAACAAACAAGAACTGCAAGTTCAAGTGTGGGCCATCATCAACATCAGATGGTTAGAAGTTCAAGTGTAGACCATCAGCAATTGTAG	1281	0.4286	MDCFPCCNKHDLETVPLRRKSIDYANSRKSTFRSFLGALSSKTGSSRQRHIKAEIRKYGTAKNDVRIFTVQELASATDNFSPDGLIGEGGFGRVYKGYLQSIDQAVAVKRLDRNRLQGSREFFSEVITLTLVKHPNLVKLIGYCVEGDQKMLVYELMVNGSLESHLLDLEADKEGLDWETRMKIAEGAARGLAYLHEEADPPIIYRDLKASNILLDENFNVKLSDFGLAKMGPTEEGKDHVSTRVMGTFGYCSPEYALTGRVTTKSDVYSFGVVLMEIITGRRVYDTCRAEEEQFLIDWAQPLLEDREKFTLMADPLLKDKFPVKGLFKALAVAAMCLEEEADTRPLMSDVVTALQHIMIPVKNNGELNKGESVKIAGHVESFRIGSSRVDNNNNLQHQQTRTASSSVGHHQHQMVRSSSVDHQQL	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco03g1942	426	PANTHER	OS07G0668900 PROTEIN	3	360	-	-
	Acco03g1942	426	Gene3D	Transferase(Phosphotransferase) domain 1	157	377	-	-
	Acco03g1942	426	ProSitePatterns	Protein kinases ATP-binding region signature.	86	109	IPR017441	GO:0005524
	Acco03g1942	426	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	203	215	IPR008271	GO:0004672\|GO:0006468
	Acco03g1942	426	CDD	STKc_IRAK	86	358	-	-
	Acco03g1942	426	FunFam	Serine/threonine-protein kinase PBS1	157	373	-	-
	Acco03g1942	426	Pfam	Protein tyrosine and serine/threonine kinase	86	292	IPR001245	GO:0004672\|GO:0006468
	Acco03g1942	426	SUPERFAMILY	Protein kinase-like (PK-like)	63	357	IPR011009	-
	Acco03g1942	426	MobiDBLite	consensus disorder prediction	388	426	-	-
	Acco03g1942	426	ProSiteProfiles	Protein kinase domain profile.	80	360	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g1942	426	Gene3D	Phosphorylase Kinase; domain 1	40	156	-	-
	Acco03g1942	426	SMART	serkin_6	80	360	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g1942	426	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	53	156	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco03g1942	Acco-ChrAcco03	45250367	45254647	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco03g1942	1	355	Glycoside Hydrolase	AT3G07070	56.056	6.41e-136	394

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Acco03g1942		PK_Tyr_Ser-Thr	3.9e-46	CL0016