Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1934 ATGATGCAACCTGGTTCTGGCATGGGTCCCCCAAACATGGGCCAACAACCTCCACAGCAGTACCCGCAGCAGCAACATCCCTACATGATGATGCCACCGCAGGCTCAGGCGTCGATGTGGACACCCTCTGTTCAACCACCGCCACAGTCGGTCGCTCCACTGCAGACAACTCAATCCGCCCAGCCCACAAGCGCTGATGAGGTTCGTACTCTTTGGATCGGTGATTTGCAGTTCTGGATGGACGAGAACTATTTGTACAATTGTTTTGCTCATACGGGCGAGGTGGCCTCGGCGAAAGTTATTCGAAACAAGCAAACTAATCAATCTGAAGGTTATGGGTTTATTGAGTTTCTCACACGCGCGGCTGCTGAGAGAATACTACAAACATTTAATGGAACCATTATGCCAAATGGTGGGCAAACCTTCAGATTGAACTGGGCAACTTTTAGTTCGGGTGAGAAGAGGCACGATGATACTCCAGATTACACTATATTTGTTGGAGATTTAGCTGCAGATGTTACAGATTACGTCCTGCAGGAGACGTTTCGGGGTAGGTTTCCCTCAATTAAAGGTGCAAAAGTTGTGATCGATAGACTCACTGGGAGGACAAAGGGTTACGGTTTTGTTAAGTTTGGAGATGAAAACGAACAAATTCGAGCTATGACTGAGATGCAAGGTGTATTATGTTCAACTAGACCCATGCGGATTGGACCAGCCACTAACAAAAACCCTGGCACTCTGCCTAAAGCTTCATACCAGAATCCTCAAGGGGCACAGAACGAACATGATCCAAATAATTCAACTATTTTTGTGGGGAATTTGGATCCTAATGTAACGGATGATCATCTTAGGCAAGTTTTTGGCCAATATGGGGAGTTAGTACACGTTAAGATTCCAGCAGGCAAACGCTGTGGGTTTGTTCAATATGCTGACAGGAGTTGTGCAGAAGAGGCACTGAGGATGTTAAATGGGACAACATTGGGCGGGCAGAGTGTTCGTCTCTCATGGGGCCGGAGTCCTGCAAACAAACAGACTCAGCCAGATCCCAACCAGTGGAATGGTGCTGCTGGGTATTATGGATATGCTCAGGGGTACGAGAACTATGGATATGCTCCTGCAGCTGCACAGGACCCCAACATGTATGGAAACTATCCTGGGTACGCCAATTACCAGCCACTACAGCAACAGCAGCATCAGCAGCTAGGTGGATATAGTTGA 1218 0.4778 MMQPGSGMGPPNMGQQPPQQYPQQQHPYMMMPPQAQASMWTPSVQPPPQSVAPLQTTQSAQPTSADEVRTLWIGDLQFWMDENYLYNCFAHTGEVASAKVIRNKQTNQSEGYGFIEFLTRAAAERILQTFNGTIMPNGGQTFRLNWATFSSGEKRHDDTPDYTIFVGDLAADVTDYVLQETFRGRFPSIKGAKVVIDRLTGRTKGYGFVKFGDENEQIRAMTEMQGVLCSTRPMRIGPATNKNPGTLPKASYQNPQGAQNEHDPNNSTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQYADRSCAEEALRMLNGTTLGGQSVRLSWGRSPANKQTQPDPNQWNGAAGYYGYAQGYENYGYAPAAAQDPNMYGNYPGYANYQPLQQQQHQQLGGYS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1934 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 149 IPR000504 GO:0003723
Acco03g1934 405 FunFam Polyadenylate-binding protein RBP45 10 153 - -
Acco03g1934 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 339 IPR000504 GO:0003723
Acco03g1934 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 343 - -
Acco03g1934 405 SMART rrm1_1 70 145 IPR000504 GO:0003723
Acco03g1934 405 SMART rrm1_1 268 335 IPR000504 GO:0003723
Acco03g1934 405 SMART rrm1_1 163 237 IPR000504 GO:0003723
Acco03g1934 405 FunFam Polyadenylate-binding protein RBP45C 246 372 - -
Acco03g1934 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 136 IPR000504 GO:0003723
Acco03g1934 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 227 IPR000504 GO:0003723
Acco03g1934 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 332 IPR000504 GO:0003723
Acco03g1934 405 MobiDBLite consensus disorder prediction 1 26 - -
Acco03g1934 405 CDD RRM1_SECp43_like 70 150 - -
Acco03g1934 405 CDD RRM2_SECp43_like 161 240 - -
Acco03g1934 405 SUPERFAMILY RNA-binding domain, RBD 68 243 IPR035979 GO:0003676
Acco03g1934 405 SUPERFAMILY RNA-binding domain, RBD 251 364 IPR035979 GO:0003676
Acco03g1934 405 Gene3D - 161 237 IPR012677 -
Acco03g1934 405 MobiDBLite consensus disorder prediction 9 26 - -
Acco03g1934 405 Gene3D - 245 348 IPR012677 -
Acco03g1934 405 Gene3D - 10 156 IPR012677 -
Acco03g1934 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 241 IPR000504 GO:0003723
Acco03g1934 405 MobiDBLite consensus disorder prediction 38 63 - -
Acco03g1934 405 FunFam Polyadenylate-binding protein RBP45C 154 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1934 Acco-ChrAcco03 45193155 45196859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1934 68 346 Eukaryotic Initiation Factors Gene Family AT2G23350 28.571 6.37e-28 114