Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1884 ATGGAGGTGGTTTGGTTTGAGGTTTCAAGGAGGAGAAAGGTTCGAGAGAGACATAAATATACTCCAAACCCTGAAGATGAAGAAGACGTTCTATGTTGTTCTAAGAGGAGGCCTAATTCTTCATACAAGAGAGACAATCAACCAAAGAAATCTATTGCTTCCTCGAAAAGGAAAAGAAATTTGCAAAATGATTTTTTGGTTGATGATTTGGAAGATGAAGAAGAAGCCGTGGTTGCCAAGATAAGGTCCAGGAGAAGAGCTCATAAAATGGACTCCATTGTGGATAAAATAGGCCCAGAATCAAGTGCAGAGAGTTCATCCTCGAGCACTACCACATCGCATTCTACACCAGCATCCACATTGCCTTCTTCCAATTCGAGAAACCATACTGAGGACGATAACATTGCATCGAGTAGGAGGAATATCAAGAGAGGTCGCTGGATTTGTCATCAGTGCATGAAAAAGGATAGATTAAACTATGTCCCTTGCAGTAAATGTGAAAAGAAATTGTACTGTGATAAGTGCATCAAGCAATGGTATCCTGATATGACAGTAGCAGAAATTGTAGAGTGTTGCCCATTTTGCCGTAAAACTTGTAATTGCAATGCCTGCTTGTGCTCAAATGGGATGATTAAGACATCCATCAGGGATATCTCTGACGATGAGAAGTTTCAATATCTGCATTATTCTATCAACTTAGTTCGTCCATTTCTGAAACAAATGTGTGAAGAACAAGCTCTAGAGGAAGAGATCGAAGCTAGAATGCAAGGGACATCACGCTCTGAGATTAAGATACTGCAAACTCCATGTAGTGATGAAGAACGTGTCTATTGCAACCATTGTGCTACTTCAATTGTTGACCTTCACCGAAGCTGCCCTGAGTGTTCCTATGAACTCTGCCTCCAATGTTGCCAAGAAGTTCGCAATGGGACTATTTTGCCTCGAGCTGAAATGAGGTTTCAGTATGTGAATAAGGGTTATGATTATATGCATGGTGGTGATCCTCTGCCAGAGTCCTGTGATTCCAAGAGTTCAGATGATCCTTGTATTGAGCAACCTATTGAGTGGACTGCAGAAAGCAATGGAAGTGTTTTTTGTGCCCCGGAGGAGTTTGGGGGATGTGGAAACTGCATGTTGGAGCTCAAGCATATTCTTCCACGGGGATGGATATCTGAATTGGAAGCTAAAGCTGGTGATTTGTTGAGAAAATGCGTGACTGAACAAACTCTTCTAAAGCACAAAGCAGCAGCAGCATCAAGCTGCAACTACTCTGTGAGAAGAGCTGCTTCCAGAGAAGGCAGTGGTGACAATGACATATACTGCCCTTCTTCAGGGGAGATTAGAAATGAGGGGTTATCAATCTTTCAAAGGCATTGGATTAATGGTGAACCTGTTATAGTTCGTGATGTTCTTCAACAAGCAACAGGTTTGAGCTGGGAGCCTATGGTAATTTGGAGGGCAGTATGTGCGGGTTTGAATTCAAAAATCAACCCAAAAATGTCGGAAGTTAAGACCATTGATTGTCTCGCAGGTTGTGAGGTAGAAATCAGCACCCACAAGTTCTTTAAAGGCTATGTGGAAGGAAGAACCTATGGAAATCTCTGGCCTGAGATGCTAAAGCTAAAAGATTGGCCTCCCTCTGATAAGTTTGAAGATCTTTTGCCCCGCCACTGTGATGAGTTTATTCGCTCCTTACCATTTCAAGAGTACACTGATCCTCGGGCTGGAATCCTCAATCTTGCTGTCAAGTTGCCAATGCATGTCTTGAAACCTGACATGGGTCCAAAAACATATATTGCTTATGGAATAAAAGAAGAACTTGGCAGAGGAGATTCTGTAACAAAGCTTCATTGTGACATGTCAGATGCGGTGAATATTTTGACCCATACAGCAGAAGTAAAGTTAAACGATGAGCAAAGGTTGTCTGTTTCAAAGTTGAAAATAGCACATAAGGTCCAAGATGAAAAAGAGAAGTGCTGTGCTGAAATCAATGGAAATATCTCTCCAAATGATGTGCCTAGAGGGGTCACACTTATTGATGTCTCTGCAGAAAATGAAACAAGAGAAGCAGGTGCTGCTCTTTGGGACATTTTCAGGAGAGAAGATATTGAGAAGTTAGAAACATATTTAAGAAAACACTCTAGAGAGTTTAGACATACGTTTTGTTCTCCAGTTGAACAGGTTTTCCATCCCATTCATGATCAATGTTTTTATTTAACAATGGAGCACAAGAAGAAGCTGAAGGAGGAATTTGGTATTGAACCATGGACATTTGAGCAGAAACTTGGGGAGGCTGTGTTTATTCCTGCTGGATGCCCTCACCAAGTCAGAAATCTCATGTCATGCACAAAAGTTGCTGCGGACTTTGTGTCCCCAGAAAATCTGGATGAGTGTCTGCGTTTAACTAATCAGTTCCGGAAGCTTCCTAAGAACCACAGGGCCAGAGAAGATAAACTTGAGATAAATAAGATGATAGTGTATGCTGCTGCCCAAATTCTCAAAGATTTTGAATCCTTGCTCAAGTGTGCTTGA 2532 0.4163 MEVVWFEVSRRRKVRERHKYTPNPEDEEDVLCCSKRRPNSSYKRDNQPKKSIASSKRKRNLQNDFLVDDLEDEEEAVVAKIRSRRRAHKMDSIVDKIGPESSAESSSSSTTTSHSTPASTLPSSNSRNHTEDDNIASSRRNIKRGRWICHQCMKKDRLNYVPCSKCEKKLYCDKCIKQWYPDMTVAEIVECCPFCRKTCNCNACLCSNGMIKTSIRDISDDEKFQYLHYSINLVRPFLKQMCEEQALEEEIEARMQGTSRSEIKILQTPCSDEERVYCNHCATSIVDLHRSCPECSYELCLQCCQEVRNGTILPRAEMRFQYVNKGYDYMHGGDPLPESCDSKSSDDPCIEQPIEWTAESNGSVFCAPEEFGGCGNCMLELKHILPRGWISELEAKAGDLLRKCVTEQTLLKHKAAAASSCNYSVRRAASREGSGDNDIYCPSSGEIRNEGLSIFQRHWINGEPVIVRDVLQQATGLSWEPMVIWRAVCAGLNSKINPKMSEVKTIDCLAGCEVEISTHKFFKGYVEGRTYGNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYTDPRAGILNLAVKLPMHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVKLNDEQRLSVSKLKIAHKVQDEKEKCCAEINGNISPNDVPRGVTLIDVSAENETREAGAALWDIFRREDIEKLETYLRKHSREFRHTFCSPVEQVFHPIHDQCFYLTMEHKKKLKEEFGIEPWTFEQKLGEAVFIPAGCPHQVRNLMSCTKVAADFVSPENLDECLRLTNQFRKLPKNHRAREDKLEINKMIVYAAAQILKDFESLLKCA 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1884 843 MobiDBLite consensus disorder prediction 99 131 - -
Acco03g1884 843 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 41 840 IPR045109 GO:0032454|GO:0033169
Acco03g1884 843 SMART cupin_9 554 806 IPR003347 -
Acco03g1884 843 FunFam Transcription factor jumonji domain-containing protein 436 815 - -
Acco03g1884 843 Pfam JmjC domain, hydroxylase 686 789 IPR003347 -
Acco03g1884 843 MobiDBLite consensus disorder prediction 18 52 - -
Acco03g1884 843 Gene3D Cupin 441 815 - -
Acco03g1884 843 CDD cupin_RmlC-like 729 778 - -
Acco03g1884 843 ProSiteProfiles Zinc finger RING-type profile. 149 196 IPR001841 -
Acco03g1884 843 MobiDBLite consensus disorder prediction 83 137 - -
Acco03g1884 843 SUPERFAMILY Clavaminate synthase-like 453 825 - -
Acco03g1884 843 MobiDBLite consensus disorder prediction 14 57 - -
Acco03g1884 843 ProSiteProfiles JmjC domain profile. 573 806 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1884 Acco-ChrAcco03 44658532 44666898 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Acco03g1884 JmjC 2.1e-14 CL0029