Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1880 ATGGTTCACCCCACCCTCCTTCTTCCTCTTCTGTACAACATAAGTAGACCAAGGTGTATGCCATTTTCGTCTATCAAAAGCTGGGCAATCGAAGCGTCACACTTACTCGTTCCTCTCATACAACAACAGCAAAGTTCCTCAGCTTCAACCTTAGGGTTCCTCTGTTCTTCTCGCCAAAAAAATCTTAGGGCTTGCAATTCATACATTTCCAATCTTATGGCGAAAACTAGACCGGGTAGAAAGGACTTGGACTCATATACCATCAGAGGTACCACCAAGGTCGTCAGAGCTGGAGACTGTGTACTGATGCGACCTTCCGACACCAGCAAGCCTCCGTACGTGGCTCGCGTGGAGAAGATCGAACAAGATAATAGGAACAACGTTAAAGTCCGCGTGAGATGGTATTATCGGCCGGAAGAGTCGATTGGAGGACGCAGGCAATTCCATGGAGCGAAAGAGCTGTTCTTGTCCGACCATTATGACGTCCAGAGTGCTCACACCATTGAAGGGAAGTGTATTGTACACTCTTTTAAGAACTACACTAAGCTTGAGAATGTAGGAGCTGAAGATTACTACTGTCGGTTTGAATACAAGGCTGCTACCGGGGCTTTCACGCCGGACCGTGTTGCTGTGTATTGCAAATGCGAGATGCCATATAACCCGGATGACCTCATGGTGCAATGCGAGGGGTGCAAGGATTGGTATCATCCTGCTTGTGTAGGCATGACGATAGAAGAAGCAAAGAAACTGGACCATTTTGTATGTTCTGAATGTTCTTCTGATGATGACATGAAAAAACCCCATGCTACATTTTCTCCATCACCGACATCTGATGGCAAGGTGGAGCCCAAGCGGCGGAAGAGATGA 867 0.4729 MVHPTLLLPLLYNISRPRCMPFSSIKSWAIEASHLLVPLIQQQQSSSASTLGFLCSSRQKNLRACNSYISNLMAKTRPGRKDLDSYTIRGTTKVVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPHATFSPSPTSDGKVEPKRRKR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1880 288 MobiDBLite consensus disorder prediction 259 288 - -
Acco03g1880 288 SMART BAH_4 93 208 IPR001025 GO:0003682
Acco03g1880 288 ProSitePatterns Zinc finger PHD-type signature. 213 258 IPR019786 -
Acco03g1880 288 FunFam Chromatin remodeling protein EBS 67 204 - -
Acco03g1880 288 CDD BAH_BAHCC1 94 228 - -
Acco03g1880 288 PANTHER OS08G0421900 PROTEIN 73 280 - -
Acco03g1880 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 273 IPR013083 -
Acco03g1880 288 ProSiteProfiles Zinc finger PHD-type profile. 210 261 IPR019787 -
Acco03g1880 288 SMART PHD_3 212 259 IPR001965 -
Acco03g1880 288 ProSiteProfiles BAH domain profile. 93 208 IPR001025 GO:0003682
Acco03g1880 288 SUPERFAMILY FYVE/PHD zinc finger 204 262 IPR011011 -
Acco03g1880 288 Gene3D - 54 204 IPR043151 -
Acco03g1880 288 FunFam Bromo-adjacent homology (BAH) domain-containing protein 205 276 - -
Acco03g1880 288 Pfam PHD-finger 212 260 IPR019787 -
Acco03g1880 288 Pfam BAH domain 95 207 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1880 Acco-ChrAcco03 44607475 44612496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1880 103 210 Core DNA Replication Machinery Family AT4G14700 30.275 4.96e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco03g1880 BAH 5e-24 No_clan