Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1878 ATGGAGGAGAGTTATCAAAGGTCAAGGGATGGCTTTTTGTGTGGGAGAGAACAAACAGCGCAACACCAACTTAAACAGCAGCAAGTAACGCGCCCAAAAGCGAACAATACTGAGAGGGAGGGAATCAGATGTTACATCATGGGCTTCGTCGACAACAACGATGGTGGTTCCTCTTCCTGTTCTTCTGTGAAAGCCAAGATCATTGCTCATCCTCACTACCCTCGCCTCCTCGCTGCTTACGTCAACTGTCAAAAGGTGGGCGCCCCGCCGGCAACGGTGGCGAGGCTAGATGAAGCATATGCTGCGGCGGCGGCAATGAGCTTCAACGGAGGTGGGTTAGGCTGCGCCGGCGAAGATCCGGCGCTGGATCAGTTCATGGAGGCATATTGTGAGATGTTGACAAAGTACGAACAAGAGCTCTCAAAACCCTTTGAGGAAGCTGTGTTCTTCCTCCAGACCATCGAGCGTCAATTCAAAGCTCTCACCGTTGATTCTCCGATCAACTTTGCTTGTAATGAGAATACAGAATCATCTGAAGATGAGATGGATGTTGAAAACAGTCGAAGCATAGTTGGTCCCCACGTGGATGATAAGGAATTGAAGGATCGGCTTCTGCGAAAGTATAGCGGATACTTGGGCAGTCTGAAACAGGAGTTCATGAAGAAGAGGAAGAAGGGGAAGCTGCCTAAAGAAGCAAGGCAACAATTACTTGGTTGGTGGAATGGACACTATAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGAACTTGCAGAATCAACAGGGCTGGATCAGAAGCAGATAAACAACTGGTTCATCAATCAAAGAAAACGTCACTGGAAGCCTTCAGAAGACATGCAGCTCGTGGTGGTGGACCCAGTGCATCCCCATCACTACTTCATGGACAGCGTTCTGGCCTCTCCATATCCCTTGGATTTCTCTCACATTATGCCCTGA 957 0.4901 MEESYQRSRDGFLCGREQTAQHQLKQQQVTRPKANNTEREGIRCYIMGFVDNNDGGSSSCSSVKAKIIAHPHYPRLLAAYVNCQKVGAPPATVARLDEAYAAAAAMSFNGGGLGCAGEDPALDQFMEAYCEMLTKYEQELSKPFEEAVFFLQTIERQFKALTVDSPINFACNENTESSEDEMDVENSRSIVGPHVDDKELKDRLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLGWWNGHYKWPYPSESQKLELAESTGLDQKQINNWFINQRKRHWKPSEDMQLVVVDPVHPHHYFMDSVLASPYPLDFSHIMP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1878 318 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677
Acco03g1878 318 ProSitePatterns 'Homeobox' domain signature. 257 280 IPR017970 GO:0000981|GO:0006355
Acco03g1878 318 Gene3D - 217 288 - -
Acco03g1878 318 CDD homeodomain 231 283 IPR001356 GO:0003677
Acco03g1878 318 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Acco03g1878 318 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Acco03g1878 318 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677|GO:0006355
Acco03g1878 318 SUPERFAMILY Homeodomain-like 221 297 IPR009057 -
Acco03g1878 318 FunFam Homeobox protein knotted-1-like 2 224 286 - -
Acco03g1878 318 SMART HOX_1 221 286 IPR001356 GO:0003677
Acco03g1878 318 Pfam KNOX2 domain 116 162 IPR005541 GO:0003677|GO:0005634
Acco03g1878 318 Pfam ELK domain 199 220 IPR005539 GO:0003677
Acco03g1878 318 SMART KNOX2_2 112 163 IPR005541 GO:0003677|GO:0005634
Acco03g1878 318 Pfam KNOX1 domain 63 100 IPR005540 GO:0003677|GO:0005634
Acco03g1878 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 287 - -
Acco03g1878 318 SMART ELK_2 199 220 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1878 Acco-ChrAcco03 44594647 44600657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1878 55 312 Homeobox Transcription Factor Family AT1G62360 68.613 2.93e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco03g1878 KNOX2 1e-20 No_clan