Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1819 ATGGTTTCTCTGGAGGATTCCCACTCCAATTCCAATCGTTTCCCTTTAACCCGAAGCTATTACTCTACTACCACTTCCGTCATCAATTCTTCATCCAGAATCCAGCGGCACACTGGAAGGTCTATGCGAACGATTCGATCTAATTTCTTCCAGGATGACCATAGCTGCTCCTTCACCACGGCCACCGAGAAATCTACCTGCCTGTCGGAAACCATGACCGATTCGGTCATCGACCTCAGGCTTGGCGAGCTCGCATCGAAGAACAACAAATCTGTGAAATCTTCTGCTACAGAGGAGGAGTTGCTTGATCTTTCTCACGCTTTCAGTGATTTCTCGGCTTGTAGCAGCGATATTTCTGGGGAGCTGCAGAGGCTGGCGTGTTTGCCGTTGCCGGAGAATGTGCTGAAGGGCGATGCCAGTGGTGATGTGGAGAAAAAGCCGGAGCCGGAGCCATGCCTGGGGTTCCTGCAGAGAGAGAATTTCTCGACTGAGATTATTGAGAGTATTTCGCCAGAGGATCTTCAGCCGGCGGTGAAGATCTGTATCGATGGGCTACTGTCACAGTCGGTTGCTGTGACACGATCTGCTGCGGCTAAGCTCAGGCTGCTGGCGAAGAATCGGGCGGATAATAGAGCTCTGATCGGTGAGTCTGGTGCGGTTCCCGCTTTGGTTCCCCTGCTTCGTTGCAGTGATCCGTGGACGCAAGAACACGCCGTCACGGCCTTGCTGAATCTCTCGCTTCACGAAGATAACAAGATGCTGATTACGAATGCAGGAGCTATTAAGTCGCTGATTTATGTGCTCAAAACCGGAACGGAGACTTCGAAGCAGAACGCGGCATGTGCGCTTCTGAGCCTTGCGTTGGTTGAAGAAAACAAGAGTTCCATTGGGGCTAGTGGGGCAATACCACCGCTTGTTTCCCTGCTATTGAGTGGTTCCAGCAGGGGAAAGAAGGACGCTCTGACGACGCTGTATAAGCTCTGCTCTATAAAGCCAAACAAGGAGAGGGCGGTGAGCGCCGGAGCAGTGAAGCCTCTTGTGGAGATGGTGGCAGAGCAAGGGACGGGTATGGCTGAGAAGGCAATGGTGATACTTAGTAGCTTGGCCGCAATTCCCGAAGGGAAGGAAGCAATTGTTGAAGAAGGTGGAATAGCTGCTCTTGTTGAGGCGATTGAAGATGGCTCTGTTAAGGGAAAGGAATTTGCTGTTCTTACACTTTTACAGCTATGTGCTGACGGAGTGAGGAATAGAGGGTTGCTTGTAAGGGAGGGTGGAATACCTCCTCTGGTTGCTCTTTCTCAGACCGGAAGTGTTAAAGCTAAGCACAAGGCAGAAACGCTCCTTGGGTATTTGAGAGAATCAAGACAAGAAGCATCCACTTCAAGTACTTAG 1392 0.5101 MVSLEDSHSNSNRFPLTRSYYSTTTSVINSSSRIQRHTGRSMRTIRSNFFQDDHSCSFTTATEKSTCLSETMTDSVIDLRLGELASKNNKSVKSSATEEELLDLSHAFSDFSACSSDISGELQRLACLPLPENVLKGDASGDVEKKPEPEPCLGFLQRENFSTEIIESISPEDLQPAVKICIDGLLSQSVAVTRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAIKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLSGSSRGKKDALTTLYKLCSIKPNKERAVSAGAVKPLVEMVAEQGTGMAEKAMVILSSLAAIPEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADGVRNRGLLVREGGIPPLVALSQTGSVKAKHKAETLLGYLRESRQEASTSST 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1819 463 FunFam U-box domain-containing protein 4 164 316 - -
Acco03g1819 463 Gene3D - 353 463 IPR011989 -
Acco03g1819 463 PANTHER U BOX DOMAIN-CONTAINING 140 451 - -
Acco03g1819 463 Gene3D - 272 352 IPR011989 -
Acco03g1819 463 Gene3D - 162 271 IPR011989 -
Acco03g1819 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515
Acco03g1819 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 218 260 IPR000225 GO:0005515
Acco03g1819 463 SMART arm_5 371 411 IPR000225 GO:0005515
Acco03g1819 463 SMART arm_5 413 453 IPR000225 GO:0005515
Acco03g1819 463 SMART arm_5 330 370 IPR000225 GO:0005515
Acco03g1819 463 SMART arm_5 207 247 IPR000225 GO:0005515
Acco03g1819 463 SMART arm_5 248 288 IPR000225 GO:0005515
Acco03g1819 463 SMART arm_5 289 329 IPR000225 GO:0005515
Acco03g1819 463 SUPERFAMILY ARM repeat 173 452 IPR016024 -
Acco03g1819 463 FunFam U-box domain-containing protein 4 317 458 - -
Acco03g1819 463 Pfam Armadillo/beta-catenin-like repeat 209 246 IPR000225 GO:0005515
Acco03g1819 463 Pfam Armadillo/beta-catenin-like repeat 291 329 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1819 Acco-ChrAcco03 43786440 43788370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1819 155 456 U-box Gene Family AT2G23140 47.097 8.15e-82 263