Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1818 ATGTCACAAGAGCTAAGTTTAAACTTTGGGCAGTCACCATCGTCTCTCTCGCTCATAACTTACTTACCCGAGAGGAAGATAGGCAGACAAACATCTCACCCTCTACAGATATATATTATATATATAGATATTCCTTTTCTCTCACATATCTCTTCCTCTGTGATACACGGCTTTCATTCATTATATATATTTTATCTGCTTGAATCAACCGTAATTGCAAGCCAAAAAGAAAGAAGGAAAAAGAAAAGGGGGAAAAAAAAGAAGAAGAGGGCCTCTCGCCCTCTCTGCCTATTATGCCTTCTCTCAGATCTTAGATTGTACCAATCTTTCATCTGGGTTGTCTTCATTTGAATGGGAATGGACCCTGGCAAGCTCTTCATTGGTGGAATTTCATGGGACACAAATGAAGAACGACTCAGACAGTACTTTCAGAATTTTGGAGATGTGGTGGAAACAGTGATTATGAAGGATCGGACCACAGGGCGTGCTCGTGGTTTTGGATTTATTGTTTTCTCTGATCCTTCTGTTGCTGAACAAGTTGTTATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCGAAAAAGGCTGTCCCTAGGGATGATCAGAACATTTCTAACAGAAGCAACAGCAGCATTCATGGATCACCGGGTCCAACCCGCACAAAGAAGATATTTGTTGGAGGTCTTGCGTCCACTGTTACCGAGAGTGACTTCAAGAAGTACTTTGATCAATTTGGAACAATTACGGATGTAGTTGTGATGTATGACCATAACACTCAAAGACCAAGAGGTTTTGGATTCATCACCTATGACTCTGAGGAAGCAGTGGATAAGGTTCTGTATAAAACATTCCATGAACTGAACGGTAAGATGGTTGAGGTTAAGCGGGCCGTTCCGAAGGAATTATCCCCAGGTCCAAGTAGAGGCCAATTAGCTGGATATAATAACTATGGTTTAACTAGAGTTAGTGGCTTTTCTAACGGTTTCATTCAGGGATATAATCCTAGCTTGGTTGGAGGGCATGGACTTAGAGCAGACGGCAGATTTAGTCCTGTTTCTGTTGGTCGAAATGGATATCCTCCATTAAGTCCCAGTTATGGGACAGGATTCAATTTTGAACCAGCATTTAGTCAAAATGCAAATTCAAACTTGACTTCTTCCCTTATGTTAGGACGAGCCTTGAACCCTTCATACAATGGAAGTTCGAGCAGATACCATAATGTCATGGGGTACACTGGTACAAGTGTAGGAAACAACTCAGCAAACCAGAATTTGTGGGGAAATGAGAGTATTAGCTTCACTAATAATCCTGCGAATTCTGATGGTTTTCACAGGTATGGAAGTCAGAATTCAGGCATGGGTTCTTTTGGTAATATTGGAACACTGTGGAGTTCCTCCCCTAGTGCTGATCAAACCGGAACTGTTGGCTCTGGCTATGGTAAGGGCACTCTTAACTATGGTCCTGGAGATGTTAATTTTAGGCCAAAAGCAGTAGGATATGGAAAAGGTAGTAGTGATGCCATTGCTGAATCAGTGTCATCATATGCTCTATCCAATGGAAGTTTTGATGGGGCATATAAAGACATTTACGAATCTGGGTCATTTTTTGGTAATCACACCTGGAGATCGTCACCTTCAGATCTAGAAGATACTGGTTCTCTTGGTTATGACCTTGGAACTGCTGTTTCAGATTTGATGAGCAAAAGCTCTGGTGGCCACATTGGGGCTTATGCTGTTGCCAATAGACAATCAAATAGAGGAATTGCTGCATAG 1776 0.4167 MSQELSLNFGQSPSSLSLITYLPERKIGRQTSHPLQIYIIYIDIPFLSHISSSVIHGFHSLYIFYLLESTVIASQKERRKKKRGKKKKKRASRPLCLLCLLSDLRLYQSFIWVVFIXMGMDPGKLFIGGISWDTNEERLRQYFQNFGDVVETVIMKDRTTGRARGFGFIVFSDPSVAEQVVMEKHVIDGRTVEAKKAVPRDDQNISNRSNSSIHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRGQLAGYNNYGLTRVSGFSNGFIQGYNPSLVGGHGLRADGRFSPVSVGRNGYPPLSPSYGTGFNFEPAFSQNANSNLTSSLMLGRALNPSYNGSSSRYHNVMGYTGTSVGNNSANQNLWGNESISFTNNPANSDGFHRYGSQNSGMGSFGNIGTLWSSSPSADQTGTVGSGYGKGTLNYGPGDVNFRPKAVGYGKGSSDAIAESVSSYALSNGSFDGAYKDIYESGSFFGNHTWRSSPSDLEDTGSLGYDLGTAVSDLMSKSSGGHIGAYAVANRQSNRGIAA 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1818 591 SMART rrm1_1 224 296 IPR000504 GO:0003723
Acco03g1818 591 SMART rrm1_1 124 195 IPR000504 GO:0003723
Acco03g1818 591 SUPERFAMILY RNA-binding domain, RBD 216 325 IPR035979 GO:0003676
Acco03g1818 591 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 283 IPR000504 GO:0003723
Acco03g1818 591 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 190 IPR000504 GO:0003723
Acco03g1818 591 MobiDBLite consensus disorder prediction 199 219 - -
Acco03g1818 591 CDD RRM1_hnRNPA_hnRNPD_like 125 195 - -
Acco03g1818 591 SUPERFAMILY RNA-binding domain, RBD 121 218 IPR035979 GO:0003676
Acco03g1818 591 MobiDBLite consensus disorder prediction 203 218 - -
Acco03g1818 591 CDD RRM2_Hrp1p 224 301 - -
Acco03g1818 591 FunFam Heterogeneous nuclear ribonucleoprotein 1 122 204 - -
Acco03g1818 591 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 120 587 - -
Acco03g1818 591 FunFam Heterogeneous nuclear ribonucleoprotein 1 220 307 - -
Acco03g1818 591 Gene3D - 220 306 IPR012677 -
Acco03g1818 591 Gene3D - 122 205 IPR012677 -
Acco03g1818 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 300 IPR000504 GO:0003723
Acco03g1818 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 199 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1818 Acco-ChrAcco03 43775339 43780117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1818 125 302 Eukaryotic Initiation Factors Gene Family AT2G36660 30.688 9.20e-15 75.5