Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1806 ATGGGGCGTTCTCGTGGGAATTTCCACGCTGATGAGGACCCCAATCAAAGGTCAAGGAGGAAAAAGAATGCTGCTAGTGGAGATATTACAGAACCTGGAGCTGCAGGTCAAGGAACAAGTGAAGGAAAAAAGGCTTTGTACCATTGCAACTACTGTAACAAAGATATTACAGGAAAAATACGTATTAAGTGTGCCGTGTGTCCTGATTTTGACCTATGTATAGAGTGCTTTTCTGTGGGAGCTGAGATGACATCTCATAAAAGCAACCACCCTTACAGGGTTATGGACAATCTATCTTTCCCTCTCATTTGCCCAGATTGGAATGCAGATGACGAAATTCTGCTTCTGGAGGGAATTGAAATGTATGGCCTGGGGAACTGGGCGGAAGTTGCTGAGCATGTTGGGACAAAGAATAAAGAAGCATGCATAGAACACTATAGGAATGTTTGCTTGAACTCCAAAACCTTTCCTCTCCCGGACATGTCCCATGTTGTTGGTAAAAACAGAAAGGAGCTGCTTGCTATGGCTAAAGGGCAAGGCGATGACAAAAAAGGGATTCCTATGGGGGATCTTAGTATAAAGGAAGAATCTCCATTTTCTCCAGCTAGAGTCAAAGTTGAAGATTCTCATAAAGCTGGTAATTCTAGCTCTTTACAGTCCAACTTAAATTCAGAATCAGAATCTGGACCAGCTAGTGGCTCACATACTGCAGCAACCGCTAACCAGAGGGCATCTAATGTGGGACGGGGCAAAGACGGTCCTGGAGTTATCAAAATGGAAGATTCTCAACTAGAAAAATATTCTGGAGGAAACAAGCCAAGTTCCTCTGGAAATGAAGATCCTTCTTTAGTACAGTTGAGTGGTTATAACCCCAAAAGACATGAATTTGATCCTGAATATGATAATGATGCTGAACAATTACTTGCTGAAATGGAATTTAAGGACACTGACACGGATGATGAACGGGAACTGAAACTACGCATTCTGCGTATATATTCAAAAAGGCTTGATGAAAGAAAGCGTAGAAAGGATTTCATAATTGAAAGAAACTTGTTATACCCAAATCCTATAGAGAAGGATTTAACACCTGAAGAGAGGACAATATGTCGAAAATATGATGCATTCATGCGCTTTCATACCAAGGAAGACCATGAGGAATTGCTTAGATCAGTAATCTCTGAGCACAGAACTCGTAGAAGAATTGAGGAGCTTCAGGAGGCCCGAGCTGCTGGTTGCCGCACGGCAGCTGAAGCAGATAGATATCTTGAACAGAAGAGAAGAACAAGAGAAGCAGAAGAAATTGCTCGTAGGTCAAAAGAAAGAGCTCAGGCTGGTCCAAACAACCATGGGGTTCCAAGTGCATTCATGTCTCCAGACAATGCAGGCAAGGATTCAAGTGGAAGACCAGCAGGGCCTGCTGGTTCAAGCTCAGTCAATGAAATGGATGTGACAGGATATTATGGGGCTGATCTGCTTTCTGTGCCTGAAAAACGTCTATGCTGTGAACATAGGTTGCCTCCAGCAATCTTCCTGAAGATGCAAGAGGTTCTGTCTGTACAAATACTGAGTGGCAATGTCACTGCAAAATCTGATGCCCACCACTTATTCAATGTGGATAGCAGCAAGATTGATTGCGTATACGATTTACTTGTGAAGAAGGGGATTGCTACGCCCTGA 1677 0.4311 MGRSRGNFHADEDPNQRSRRKKNAASGDITEPGAAGQGTSEGKKALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGAEMTSHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKEACIEHYRNVCLNSKTFPLPDMSHVVGKNRKELLAMAKGQGDDKKGIPMGDLSIKEESPFSPARVKVEDSHKAGNSSSLQSNLNSESESGPASGSHTAATANQRASNVGRGKDGPGVIKMEDSQLEKYSGGNKPSSSGNEDPSLVQLSGYNPKRHEFDPEYDNDAEQLLAEMEFKDTDTDDERELKLRILRIYSKRLDERKRRKDFIIERNLLYPNPIEKDLTPEERTICRKYDAFMRFHTKEDHEELLRSVISEHRTRRRIEELQEARAAGCRTAAEADRYLEQKRRTREAEEIARRSKERAQAGPNNHGVPSAFMSPDNAGKDSSGRPAGPAGSSSVNEMDVTGYYGADLLSVPEKRLCCEHRLPPAIFLKMQEVLSVQILSGNVTAKSDAHHLFNVDSSKIDCVYDLLVKKGIATP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1806 558 ProSiteProfiles SWIRM domain profile. 472 558 IPR007526 GO:0005515
Acco03g1806 558 Pfam Zinc finger, ZZ type 45 86 IPR000433 GO:0008270
Acco03g1806 558 SUPERFAMILY Homeodomain-like 100 153 IPR009057 -
Acco03g1806 558 SUPERFAMILY RING/U-box 47 109 - -
Acco03g1806 558 MobiDBLite consensus disorder prediction 211 246 - -
Acco03g1806 558 MobiDBLite consensus disorder prediction 267 285 - -
Acco03g1806 558 MobiDBLite consensus disorder prediction 176 190 - -
Acco03g1806 558 MobiDBLite consensus disorder prediction 176 298 - -
Acco03g1806 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 154 IPR017930 -
Acco03g1806 558 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Acco03g1806 558 MobiDBLite consensus disorder prediction 423 479 - -
Acco03g1806 558 SMART sant 103 152 IPR001005 -
Acco03g1806 558 Gene3D - 473 557 IPR036388 -
Acco03g1806 558 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Acco03g1806 558 SMART zz_5 43 88 IPR000433 GO:0008270
Acco03g1806 558 FunFam Transcriptional adapter 2 100 152 - -
Acco03g1806 558 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
Acco03g1806 558 FunFam Transcriptional adapter 2 473 557 - -
Acco03g1806 558 Gene3D - 105 153 - -
Acco03g1806 558 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 47 553 - -
Acco03g1806 558 MobiDBLite consensus disorder prediction 1 41 - -
Acco03g1806 558 FunFam Transcriptional adapter 40 95 - -
Acco03g1806 558 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Acco03g1806 558 Gene3D - 38 96 IPR043145 -
Acco03g1806 558 MobiDBLite consensus disorder prediction 1 26 - -
Acco03g1806 558 SUPERFAMILY Homeodomain-like 464 555 IPR009057 -
Acco03g1806 558 PIRSF Txn_adaptor_ADA2 34 558 IPR016827 GO:0003713|GO:0006357|GO:0035065
Acco03g1806 558 MobiDBLite consensus disorder prediction 423 443 - -
Acco03g1806 558 Pfam Myb-like DNA-binding domain 106 148 IPR001005 -
Acco03g1806 558 CDD SANT 107 149 IPR001005 -
Acco03g1806 558 CDD ZZ_ADA2 47 95 IPR041983 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1806 Acco-ChrAcco03 43634210 43639352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1806 1 555 EF-hand Containing Proteins AT3G07740 45.862 4.29e-159 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco03g1806 Myb_DNA-binding 3.4e-11 CL0123