Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1798 ATGGGTGATCATCACGAGATTCAACAAAAACCAGAACAAGAAGAACCCTTGCTTAGAAATCATATTTCTTATCTCAATAAGAAGACGAATGATCTCCAGAGAAGAAGGCGTCTCAGCCGCCATGGCAAAGGTTCTTCTTTTGACAATTATAATATCAACAATGAAGAAGAAGAAAACACGATTCATCAAAATCCTCCGCCTTTATCAAACTTAGGTCCTGAACAATTCAGATCCATGAAACTAGTCTTATTCCTAACTGCTTACCTAGGGTTAGGAACCCTAATCTTCTTCCTCATAAGGCATCAAATAAAGGGCATAGAGACCAATGGCTTCCTCGATGCCCTTTATTTCTGTGTTGTTACTATGACGACGGTTGGTTATGGTGACCTTGTTCCAAACAGCAAATTGGCCAAACTTCTTGCATGTGTCTATGTCTTCACAGGCATGGCCCTTGTAGGGATGATCATGAGCAAAGCAGCAGATTACTTCCTTGAGAAGCAGGAAATCCTCTTCGCTCGGGCCATCTACGTGGGTGAAAACGTGAGTCCCTCAGAGCTTCTCGAGGAGGTCGAGGCACATAAAGTGAAGTACAAGTTCTTTACAGCATCAGCTGTTCTTGTAGTGCTCATGATTGTAGGAACTGTTTTTCTTTGTTTGGTTGAGAATCTTGAGATTGTGGATGCCTTTTATTGTGTTTGTTCTACTGTTACTACTTTAGGGTATGGTGATAGGAGCTTCTCCACAAGTATTGGACGTGGTTTTGCTGTGTTTTGGATATTGAGTAGCACAGTTTGTTTGGCTCAGTTTTTCTACTATCTAGCTGAGCTTTATACTGAAGGTAGACAAAAATCTCTGGTCAAAACTGTTCTTTCCAGAAAACTAGTACGCTCAGATCTTGAGGCTGCAGATCTTGATCATGACAATGTTGTTAGCGCTGCAGAGTTTATTGTGTACAAGTTGAAGGAAATGGGAAGGATCAGCCAACAAGATATTTCAATTGTGATGGAGGCTTTTAGGAAACTTGACTTTGATAAATCAGGAACTTTGACTGAAGCTGATCTCTAA 1065 0.4085 MGDHHEIQQKPEQEEPLLRNHISYLNKKTNDLQRRRRLSRHGKGSSFDNYNINNEEEENTIHQNPPPLSNLGPEQFRSMKLVLFLTAYLGLGTLIFFLIRHQIKGIETNGFLDALYFCVVTMTTVGYGDLVPNSKLAKLLACVYVFTGMALVGMIMSKAADYFLEKQEILFARAIYVGENVSPSELLEEVEAHKVKYKFFTASAVLVVLMIVGTVFLCLVENLEIVDAFYCVCSTVTTLGYGDRSFSTSIGRGFAVFWILSSTVCLAQFFYYLAELYTEGRQKSLVKTVLSRKLVRSDLEAADLDHDNVVSAAEFIVYKLKEMGRISQQDISIVMEAFRKLDFDKSGTLTEADL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1798 354 FunFam Two-pore potassium channel 1 179 287 - -
Acco03g1798 354 SUPERFAMILY Voltage-gated potassium channels 75 170 - -
Acco03g1798 354 ProSitePatterns EF-hand calcium-binding domain. 303 315 IPR018247 -
Acco03g1798 354 ProSitePatterns EF-hand calcium-binding domain. 342 354 IPR018247 -
Acco03g1798 354 Gene3D - 75 169 - -
Acco03g1798 354 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 22 131 IPR003280 GO:0005267|GO:0016020|GO:0071805
Acco03g1798 354 Gene3D - 265 354 - -
Acco03g1798 354 PRINTS Two pore domain K+ channel signature 237 246 IPR003280 GO:0005267|GO:0016020|GO:0071805
Acco03g1798 354 PRINTS Two pore domain K+ channel signature 120 148 IPR003280 GO:0005267|GO:0016020|GO:0071805
Acco03g1798 354 SUPERFAMILY EF-hand 292 354 IPR011992 -
Acco03g1798 354 ProSiteProfiles EF-hand calcium-binding domain profile. 329 354 IPR002048 GO:0005509
Acco03g1798 354 Gene3D - 204 264 - -
Acco03g1798 354 Pfam Ion channel 205 277 IPR013099 -
Acco03g1798 354 Pfam Ion channel 84 163 IPR013099 -
Acco03g1798 354 SUPERFAMILY Voltage-gated potassium channels 195 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1798 Acco-ChrAcco03 43561269 43563370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1798 50 354 Ion Channels AT5G55630 56.536 6.06e-127 367