Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1780 ATGGATGACCTCTTCACCGTCGACGATTTCCCTTACCACGTGGCGCCATTTCCCGACCCCTCTGACCTCATTTACACCCACCCCACGCCGGCTGTTCACCCCCCCGACGTCGCCGACCGCCACCGGCTTCTTAACCCCACTCCACAGAAGCTCCGGCCTATTCGGAGCCTCGAGCGGTCTTCTTCGCCGCCGTCGCTGGTTGCCGAGATTCCTGAGAATGGAGGGCTAGCCGGAGCATCTAACGATGTCGGTTACCTTTGTCACCAGTCAAGTCAGCATCTTGAGTTTCTGGATCAGCGAGCTGAGTCTTGTGAGGAGCTGAGGAAGGAGGGTTCCGATGATGTCGCCGGAAATGATTTCCTTCAGACGGAGGTTCCGGCTGGGGTCGGGCCGTCTCATACTTGCGACCCGGATGCCAACGGGTTTAAGTCGAAGCAGGAATCTGGCTCATGTAGGGACAATGATGATGACAATTCATATGAAAGTGTGGAGGAACCCAGGAGTGGAAAGAAGAGAGTAAAAGCGATCACAAAGTTTGAAGCTTTTCTGGAAAATTTGGCAATGAAGGTGATGGAAAAACAAGAGCAGATGCATAAGCAACTGCTGGATATGGTGGAAAAGAAAGAAAGGGAAAGAGCTATGAGAGAAGAAGCTTGGAAGCAAAAGGAGATGGAAAGAATTAAAAAGGATGAGGAGGCCAGAGCTCAAGAAAAGTCTAACAACCTGGCTCTATTATCATTAATTCAAAATCTATTGGGCCATGAAATTCAAATCCCCCAACCGGCAGCAACCGGCTTGAGAGGGGAGGACGAAGGCGAAGCGAACGTCCAGAAAGATTTCAAGAGTGATCAGAGTAACAATAGATGGCCAGAAGCTGAAGTACAAGCTCTCATAACTCTAAGAGCTTCTTCAGAACACAGATTTCAAGGGATGGGATCCAAAGTATCTCTATGGGAGGAAATATCTAAAGCAATGCATAATATGGGTTACAATCGTTCCGCGAAGAAGTGCAAGGAGAAATGGGAAAACATAAACAAGTATTATAAGAGATCAACGGAGAGTAGGAAAAAGCGACCGCTAAGTAGTAAAGCTTGCCCATACTTTGATGAGTTGGACATTCTGTACCGAAGCCGGCTCCCAAATATTGGGAATGCCCTTAGCGACACCTCTATGTCATCAAAGACTGAAAAGGAATCATGTAAGAGTTGA 1209 0.4814 MDDLFTVDDFPYHVAPFPDPSDLIYTHPTPAVHPPDVADRHRLLNPTPQKLRPIRSLERSSSPPSLVAEIPENGGLAGASNDVGYLCHQSSQHLEFLDQRAESCEELRKEGSDDVAGNDFLQTEVPAGVGPSHTCDPDANGFKSKQESGSCRDNDDDNSYESVEEPRSGKKRVKAITKFEAFLENLAMKVMEKQEQMHKQLLDMVEKKERERAMREEAWKQKEMERIKKDEEARAQEKSNNLALLSLIQNLLGHEIQIPQPAATGLRGEDEGEANVQKDFKSDQSNNRWPEAEVQALITLRASSEHRFQGMGSKVSLWEEISKAMHNMGYNRSAKKCKEKWENINKYYKRSTESRKKRPLSSKACPYFDELDILYRSRLPNIGNALSDTSMSSKTEKESCKS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1780 402 ProSiteProfiles Myb-like domain profile. 281 345 IPR001005 -
Acco03g1780 402 PANTHER FI21293P1 127 390 - -
Acco03g1780 402 FunFam Trihelix transcription factor GT-2 289 350 - -
Acco03g1780 402 SUPERFAMILY Homeodomain-like 286 360 IPR009057 -
Acco03g1780 402 CDD GT1 287 352 - -
Acco03g1780 402 Gene3D - 289 350 - -
Acco03g1780 402 MobiDBLite consensus disorder prediction 148 169 - -
Acco03g1780 402 MobiDBLite consensus disorder prediction 123 169 - -
Acco03g1780 402 Pfam Myb/SANT-like DNA-binding domain 287 372 IPR044822 -
Acco03g1780 402 Coils Coil 191 211 - -
Acco03g1780 402 Coils Coil 221 241 - -
Acco03g1780 402 SMART sant 285 347 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1780 Acco-ChrAcco03 43349998 43352065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1780 168 377 Trihelix Transcription Factor Family AT5G47660 43.805 5.70e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Acco03g1780 Myb_DNA-bind_4 1.5e-22 CL0123