Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1742 ATGGCTGACGAATCCAATACCACCTGCTGGTCTTTCCTGGACTTTCGACAGTTTCATGGTGCCAAGTTTGATGAGAAGAAATTGTTGGAGAGCGGCGAGAGGGGAGATATGCCTGTCGATAACGGAAATCCGTCCGGCATTATGTCTAATGGCAACAATCATGCCAAAAGGACTAGGGAGACGACTATCTTTGAACAGTTTCAAAGCCAGGGGCAGAATTCATCTCTTTCGAATGGAACTTTATCAAATCATCTGGATGAAAGGCCGCAAAAGCCCTTACTTCCACCTTTTGAATCAGCTGATATGCGTGCTTTAGGAGAGAGTTTATGCAGGGATATTATTCGTGGGAGCCCGGATGTTAAGTGGGAAAGTATCAAGGGGTTAGAGAATGCCAAACGTTTGCTGAAAGAGGCTGTTGTGATGCCAATTAAGTACCCCAAGTATTTCACTGGTTTACTATCACCATGGAAAGGGATTCTTTTGTTTGGCCCTCCCGGGACTGGAAAGACGATGCTTGCAAAGGCAGTTGCAACAGAGTGCAAGACTACGTTTTTTAATATTTCAGCATCATCGGTTGTCAGCAAATGGCGAGGTGATTCAGAGAAGGCGGTGAGGGTGTTATTTGACTTAGCTCGGCACCATGCACCCTCAACAATATTTCTTGATGAAATTGACGCAATCATTAGTCAACGTGGTGAAGCACGCAGTGAGCATGAAGCAAGTAGACGGCTTAAGACTGAGCTACTCATACAGATGGACGGTTTGACAAAAACCAATGAACTTGTTTTTGTCTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGACGTCTTGAGAAGCGTATCCTCGTACCACTCCCTGAACCAGAAGCAAGAAGAGCAATGGTTGAGGAGCTCCTACCACAGCATGATGGTGGGGAGCAGATCCCCTATGATTTCTTGGTGGAGCAAACTGATGGATTTTCAGGCTCAGATATTCGTTTACTGTGTAAAGAGGCAGCAATGCAGCCCTTGAGACGCCTGATGTCACAACTTGAACAGAGACAAGAGATGGTGCCTGAAGAAGAGCTGCCAAAGGTGGGGCCAATCAGAACAGAAGATATAAAGGTAGCTTTGAAGAATACACGACCATCTGCTCATCTTCAGGCTCCCAAATATGAGCAGTTCAATAAAGATTACGGTAGTCAAATTCTTCATTGA 1212 0.4571 MADESNTTCWSFLDFRQFHGAKFDEKKLLESGERGDMPVDNGNPSGIMSNGNNHAKRTRETTIFEQFQSQGQNSSLSNGTLSNHLDERPQKPLLPPFESADMRALGESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKAVRVLFDLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMVEELLPQHDGGEQIPYDFLVEQTDGFSGSDIRLLCKEAAMQPLRRLMSQLEQRQEMVPEEELPKVGPIRTEDIKVALKNTRPSAHLQAPKYEQFNKDYGSQILH 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1742 403 Gene3D - 291 379 - -
Acco03g1742 403 SMART AAA_5 155 292 IPR003593 GO:0016887
Acco03g1742 403 PANTHER AAA DOMAIN-CONTAINING 61 399 - -
Acco03g1742 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 386 IPR027417 -
Acco03g1742 403 CDD RecA-like_VPS4-like 125 288 - -
Acco03g1742 403 Pfam AAA+ lid domain 318 352 IPR041569 -
Acco03g1742 403 Gene3D - 118 393 IPR027417 -
Acco03g1742 403 MobiDBLite consensus disorder prediction 68 97 - -
Acco03g1742 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 291 379 - -
Acco03g1742 403 MobiDBLite consensus disorder prediction 68 85 - -
Acco03g1742 403 MobiDBLite consensus disorder prediction 29 53 - -
Acco03g1742 403 Pfam ATPase family associated with various cellular activities (AAA) 159 289 IPR003959 GO:0005524|GO:0016887
Acco03g1742 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 118 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1742 Acco-ChrAcco03 42754840 42760949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1742 153 362 Calmodulin-binding Proteins AT3G56690 36.620 8.35e-32 126