Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1630 ATGGGGAGAGGAAGATTGGCGATGAAATTGATAGAGAAAGAGAAATCAAGAAAGGCAACGTTTCAGAAGAGAAAGAATGGAATAATGAAGAAAGCTCATGAGCTTTCTACACTCTGTGGAGTTGATTGTTGCTTGATTGTTTATAGCCCTAACTCCATTAACGACCTTCCTGAGATTTGGCCTCAAGATCGCATACAGGTGCATAGAATCATTGAGAAGTACAAGGCAAAGATAGCTGAGAAAAGTCCTAAGAAGTACAATGTGATGGAGTTCTTCAAGGACAGGAAGAACAGGGTGGAAGCCGAAGCGTGCAAGCTCCGGCAAGAGAGACTCCGGAAACTCTATCCAACGTGGGACTTCACTTTCGACAAACTCGGCGAAGAACAGCTGAGAATGTTTGTCGCCCTCTTGGATTCCAGAATCGAAGATTGCAAAGAGAGGATCAACATGTTGAAGAAGAAATGTTACATTGAGGAAAAACAACAACAACAAATAGCCGAATCATCCTCAGACAAATCATCAGCTTCAGCTTCAAACCGAAGCCACCTTAGTTTCATACACAACAACAGTAGTACTACTACGTTTTCTTCAGCTCATATTCGTCAAACGCTAGATTTCCCTCTCAAGTCTGAGGATAATCATCTTCATCATCGTCTGATGATTCAACCCTTTCATCCAAGTCTGATGCCATTGACGATGATCACACCGATTGATTCTGCAGAGACAACACACAATGATGCTGCTTTTGGTCATTATGATCTGATGATGAGAGAATCTTACTGTCCATCTTCTTCATGGTGTTACACTAATAATAATAATAACAACAATAATTACTATCCTAATTATTTACAGAATAGTAATAATAATATTCTGCAGATTTCTCCTCATGAAGCAAATTTGCAGGTGAATAATAATATTCCAGCAGCTCCTCTGATGATGCAAGAATTTCAGAGCTATCATCACTACGGGTATAATCAACATGATCTGCTTCAAGTTCATCATCAGAAATTCAACTCTAAGGACCAAAAGAAGTAA 1035 0.3952 MGRGRLAMKLIEKEKSRKATFQKRKNGIMKKAHELSTLCGVDCCLIVYSPNSINDLPEIWPQDRIQVHRIIEKYKAKIAEKSPKKYNVMEFFKDRKNRVEAEACKLRQERLRKLYPTWDFTFDKLGEEQLRMFVALLDSRIEDCKERINMLKKKCYIEEKQQQQIAESSSDKSSASASNRSHLSFIHNNSSTTTFSSAHIRQTLDFPLKSEDNHLHHRLMIQPFHPSLMPLTMITPIDSAETTHNDAAFGHYDLMMRESYCPSSSWCYTNNNNNNNNYYPNYLQNSNNNILQISPHEANLQVNNNIPAAPLMMQEFQSYHHYGYNQHDLLQVHHQKFNSKDQKK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1630 344 CDD MADS 2 61 - -
Acco03g1630 344 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Acco03g1630 344 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Acco03g1630 344 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Acco03g1630 344 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Acco03g1630 344 Coils Coil 134 154 - -
Acco03g1630 344 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco03g1630 344 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco03g1630 344 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Acco03g1630 344 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1630 Acco-ChrAcco03 39868005 39869829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1630 1 147 Type I MADS-box Gene Family AT5G55690 35.099 1.93e-24 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco03g1630 SRF-TF 2.7e-20 No_clan