Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1592 ATGATCTGTTCCGTAACTTTTGGGGAAAATGCTAATTTAAATATTGTTTTTCATGGCCATGATTTGGAACCTTCCATTGTGGAACCATTGCAAGAAAGAACCCGAGGCCTTAAAAAACAGATGATTAGCAAAGGAAGCAGAGATATAAAGAAGGACGAGACCTCGCCTTCTTCCTCCTTCTCAGCCTCACCTGCGAGCAAAATGGACACCACCGCTAGAATCTCCGATAAAGACAAAGCAATTGCTCAGTACAGTGCTGATGCAGGGATTTTAGCCGAGTATGAACAATCTGGTGTGTCGGGTAAGTCATTCGATTACTCAAGATCGGTTCTTGATGCTCCAAAATCAGTGCCAGACGATAAAATGACGGCTTACTTGTCGAGAATCCAAAGAGGTGGTCTTGTTCAGCCATTTGGGTGTATGCTTGCAATTGAAGAACCCACTTTTCGTATTATTGGGTACAGTGAGAATTGTTTTGAAATGTTGGATTTAAACAGAAAATCTCATTCAAAACGATTTGTTAGTTTAATTGGAGTTGATGCTACTACTCTATTCACGCCTTCCTCAGGGGCTTCTCTTGCAAAAGCTTCGGCTTCGAGGGAAATTTCGCTACTAAACCCCATTTGGGTCTGTTCTAGAACAACCCAGAAGCCTTTTTATGCTATAATGCATCGAATTGATGTGGGGATTGTAATTGATTTGGAGCCTGCGAGGTCTAGTGATCATGCATTGTCACTTGCTGGCGCCGTACAGTCTCAGAAACTAGCTGTACGGGCAATTTCAAGGCTGCAATCTCTTCCTGGGGGAGATATTGGAGCTTTGTGTGATACTGTTGTTGAAGAAGTTCAAAAGCTCACTGGATATGACAGGGTTATGATATATAAGTTCCATAAGGATGATCATGGGGAAGTTGTGTCTGAAATCAGAAGGTCAGATTTAGAACCCTTTTTGGGTTTGCATTACCCTGCCACGGATATCCCTCAAGCTTCTCGCTTCTTGTTCAAGCAGAATAGAGTCAGGATGATCTGTGATTGCCATGCAAAGCCCGTTGAGGTGATTCAAAGTGAAGAGTTAAGACAGCCTCTTTGCTTGGTCAATTCTACCCTTAGGTCACCACATCAATGTCATGCACAGTACATGGAAAACATGGGCTCAATTGCTTCACTGGTTATGGCTGTTATTGTCAATGGCAATGATACCACAAAGCTATGGGGTTTGCTTGTTTGTCACCACACTTCGCCTCGTCATGTCCCTTTCCCGCTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGATTGCAGCTTTACATGGAGATGCAATTGGGATCACAGATGGCAGAGAAGAGAACTCTTAAAACCCAAACCTTACTATGTGACATGCTTCTCCGTGATGCTCCTTTTAGTATTGTTACACAATCTCCTAACATAATGGATCTTGTGAAGTGTGATGGTGCTGCACTGCTTTTTGGTGGAAACTGTTGGCTATTAGGCACAACCCCAACTGAATCACAGGTAAAAGACATTGCAGAATGGCTACTTAGTAGTCATGGGGACTCAACTGGTTTGAGCACAGATAGTTTGGCTGATGCCAGTTATCCAGATGCTGCTTCACTGGGGGATGCAGTTTGTGGCATGGCAACAGCAAGGATCAATTCAAGAGATTTCTTGTTCTGGTTCAGGTCTCATGCTGCTAAGGAGATCAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAAGATGATGGAGGAAAGATGAATCCTAGACTTTCATTTAAAGCATTTCTTGAAGTAGTAAAAAGCAAAAGTGTGCCGTGGGAGGTGTCAGAAATCAATGCTATTCACTCATTACAGCTTATAATGAGAGATTCATTCCAAGATGCAGAGAACTGTGGTCCTAAGGCTCTAGCTCATGTGAAGCAAGAGGACTCAAGTATGGGAGGGGATGGGATAGAAGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTGATTGAAACAGCAACAGTTCCAATTTTTGGGGTTGATTCAGCTGGTATAATCAATGGATGGAATGCCAAAATTGCTGAACTGACGGGTCTACAAACCAGTGAAGCTATGGGACAATCCCTTGTAAATGAAGTTGTCGTTGAGGACTCACGAGAAACTGTTGATAATATTCTAAAAAGAGCCCTGGAAGGTCAGGAGGACAAAAATGTTGAGTTGAAGTTAAAGCACTTTGGTCCGCATCGGCAAAAATCAGTTGTATATATTATGGCCAATGCCTGCACAAGTAGGGATTACAAAAATGCTGTTGTTGGGGTCTGCTTTGTGGGTCAAGACATCAGTCATGAGAAATCTGTTCTTGATAAATTTATCAAGTTGGAAGGTGACTACAAAGCTATTATACAGAGTCCCAACCCACTAATTCCTCCCATATTTGCTTCAGATGAGAATGCCTGTTGCTCTGAATGGAATACAGCCATGGAAAGGCTAACCGGTTGGAAGAGAGATGAAGTTATTGGGAAAATGCTTCCTGGGGAGATCTTTGGAGGTTTATGTCGGTTGAAAAGCCATGATACGCTTACTAGCTTCACAATTTTATTGTATCAAGGAATCAGTGGCCAAGATTCTGAGAAGTTCCCACTTAAATTTTTTAATAGAAAGGAGGAACTTGTGGAGGTTTTCTTGGCAGTGAACAAGAGGAATGATGCAGCTGGTAAAATAATTGGATGTTTCTGTTTCTTGCAGATTGTACCACCAGACCTGCATCGACCCTCAGAAGAACAAAGGTCACAATGCAGGGGAACACTTTCTGAATTTAAGGAATTAGATTATATACTACAAGAGATAAAGAATCCTTTAAATGGTATGCTTTTCACACAAAATCTCCTGCAAAATACAGCTGTCTCAGAAAATCAGAAACAATTTCTTGATACTAGCAATGCTTGTGAGAGACAAATTATGACAATTATTGAGGATGCAGATTTTGGAAGTATCGATGAAGGAGCTTTGCAGCTAAAAATGGAGGAGTTTCTCCTGGGAAATATCGTAGATGCCATAGTTAGTCAAGTCATGATCATGATAAGAGAAAGAAAGTTGCGGCTATTTCATGAAATTCCTGATGAAATCAAAACACTCACTCTATTTGGTGATCAAATGAGGCTTCAGGTGGTCTTGTCTGACATTTTGATTAATGTGGTCTGCCACACACCATCTCCAAATGGCTGGGTAGAAATAAAGATTTCGCCTGGGCTGAAAATAATACAGGATGGAAGTGAGTTTATTCATCTGCAGTTCAGAATGACACATGCCGGTGAAGGTCTTCCTTCTGAAATTCTTCAGGAAATGTTCGAAGGAGGGAATCAATGGACTACAAAGGAAGGTTTAGGGCTATACAAGTCGAGAAAAATCCTCATAAAGATGAATGGCCATGTCCACTATGTAAGAGAACAAAACATGTGTTACTTCCTCATTGATATTCAACTGAGAACAAGAAAAGAAAGGCAGAGGATTTTTCAAGCGTTAGACACGAGCATGTTATTGTAG 3528 0.4158 MICSVTFGENANLNIVFHGHDLEPSIVEPLQERTRGLKKQMISKGSRDIKKDETSPSSSFSASPASKMDTTARISDKDKAIAQYSADAGILAEYEQSGVSGKSFDYSRSVLDAPKSVPDDKMTAYLSRIQRGGLVQPFGCMLAIEEPTFRIIGYSENCFEMLDLNRKSHSKRFVSLIGVDATTLFTPSSGASLAKASASREISLLNPIWVCSRTTQKPFYAIMHRIDVGIVIDLEPARSSDHALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEEVQKLTGYDRVMIYKFHKDDHGEVVSEIRRSDLEPFLGLHYPATDIPQASRFLFKQNRVRMICDCHAKPVEVIQSEELRQPLCLVNSTLRSPHQCHAQYMENMGSIASLVMAVIVNGNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLMQAFGLQLYMEMQLGSQMAEKRTLKTQTLLCDMLLRDAPFSIVTQSPNIMDLVKCDGAALLFGGNCWLLGTTPTESQVKDIAEWLLSSHGDSTGLSTDSLADASYPDAASLGDAVCGMATARINSRDFLFWFRSHAAKEIKWGGAKHHPEDKDDGGKMNPRLSFKAFLEVVKSKSVPWEVSEINAIHSLQLIMRDSFQDAENCGPKALAHVKQEDSSMGGDGIEELSSVAFEMVRLIETATVPIFGVDSAGIINGWNAKIAELTGLQTSEAMGQSLVNEVVVEDSRETVDNILKRALEGQEDKNVELKLKHFGPHRQKSVVYIMANACTSRDYKNAVVGVCFVGQDISHEKSVLDKFIKLEGDYKAIIQSPNPLIPPIFASDENACCSEWNTAMERLTGWKRDEVIGKMLPGEIFGGLCRLKSHDTLTSFTILLYQGISGQDSEKFPLKFFNRKEELVEVFLAVNKRNDAAGKIIGCFCFLQIVPPDLHRPSEEQRSQCRGTLSEFKELDYILQEIKNPLNGMLFTQNLLQNTAVSENQKQFLDTSNACERQIMTIIEDADFGSIDEGALQLKMEEFLLGNIVDAIVSQVMIMIRERKLRLFHEIPDEIKTLTLFGDQMRLQVVLSDILINVVCHTPSPNGWVEIKISPGLKIIQDGSEFIHLQFRMTHAGEGLPSEILQEMFEGGNQWTTKEGLGLYKSRKILIKMNGHVHYVREQNMCYFLIDIQLRTRKERQRIFQALDTSMLL 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1592 1175 MobiDBLite consensus disorder prediction 36 54 - -
Acco03g1592 1175 SMART gaf_1 270 450 IPR003018 GO:0005515
Acco03g1592 1175 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1044 1145 IPR003594 -
Acco03g1592 1175 NCBIfam PAS domain S-box protein 664 779 IPR000014 -
Acco03g1592 1175 FunFam Phytochrome 445 575 - -
Acco03g1592 1175 CDD HisKA 930 987 IPR003661 GO:0000155|GO:0007165
Acco03g1592 1175 PIRSF Phytochrome_conventional 55 1165 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Acco03g1592 1175 SMART pas_2 790 860 IPR000014 -
Acco03g1592 1175 SMART pas_2 659 726 IPR000014 -
Acco03g1592 1175 ProSiteProfiles PAC domain profile. 731 787 IPR000700 -
Acco03g1592 1175 SMART HKATPase_4 1044 1158 IPR003594 -
Acco03g1592 1175 Pfam His Kinase A (phospho-acceptor) domain 939 996 IPR003661 GO:0000155|GO:0007165
Acco03g1592 1175 ProSiteProfiles PAS repeat profile. 788 843 IPR000014 -
Acco03g1592 1175 Pfam Phytochrome region 453 628 IPR013515 GO:0006355|GO:0009584
Acco03g1592 1175 Pfam PAS fold 124 237 IPR013654 GO:0006355
Acco03g1592 1175 ProSiteProfiles Histidine kinase domain profile. 939 1158 IPR005467 -
Acco03g1592 1175 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1000 1146 IPR036890 -
Acco03g1592 1175 SUPERFAMILY PYP-like sensor domain (PAS domain) 663 771 IPR035965 -
Acco03g1592 1175 SUPERFAMILY GAF domain-like 250 436 - -
Acco03g1592 1175 Gene3D - 445 618 IPR043150 -
Acco03g1592 1175 CDD PAS 802 910 IPR000014 -
Acco03g1592 1175 Gene3D PAS domain 804 913 - -
Acco03g1592 1175 MobiDBLite consensus disorder prediction 36 72 - -
Acco03g1592 1175 PANTHER OS08G0260000 PROTEIN 122 993 - -
Acco03g1592 1175 MobiDBLite consensus disorder prediction 55 70 - -
Acco03g1592 1175 Pfam GAF domain 270 439 IPR003018 GO:0005515
Acco03g1592 1175 Gene3D PAS domain 659 787 - -
Acco03g1592 1175 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 270 430 IPR016132 -
Acco03g1592 1175 Gene3D - 974 1149 IPR036890 -
Acco03g1592 1175 Gene3D PAS domain 128 373 - -
Acco03g1592 1175 CDD PAS 668 775 IPR000014 -
Acco03g1592 1175 SUPERFAMILY PYP-like sensor domain (PAS domain) 129 239 IPR035965 -
Acco03g1592 1175 FunFam Phytochrome 804 912 - -
Acco03g1592 1175 ProSitePatterns Phytochrome chromophore attachment site signature. 370 379 IPR013516 -
Acco03g1592 1175 CDD HATPase_Phy-like 1043 1156 IPR044767 -
Acco03g1592 1175 FunFam Phytochrome 653 785 - -
Acco03g1592 1175 Gene3D - 251 601 IPR029016 -
Acco03g1592 1175 SUPERFAMILY GAF domain-like 448 626 - -
Acco03g1592 1175 PRINTS Phytochrome signature 185 207 IPR001294 GO:0006355|GO:0009584
Acco03g1592 1175 PRINTS Phytochrome signature 470 490 IPR001294 GO:0006355|GO:0009584
Acco03g1592 1175 PRINTS Phytochrome signature 588 606 IPR001294 GO:0006355|GO:0009584
Acco03g1592 1175 PRINTS Phytochrome signature 370 391 IPR001294 GO:0006355|GO:0009584
Acco03g1592 1175 PRINTS Phytochrome signature 773 793 IPR001294 GO:0006355|GO:0009584
Acco03g1592 1175 PRINTS Phytochrome signature 679 694 IPR001294 GO:0006355|GO:0009584
Acco03g1592 1175 PRINTS Phytochrome signature 660 676 IPR001294 GO:0006355|GO:0009584
Acco03g1592 1175 PRINTS Phytochrome signature 285 304 IPR001294 GO:0006355|GO:0009584
Acco03g1592 1175 PRINTS Phytochrome signature 555 574 IPR001294 GO:0006355|GO:0009584
Acco03g1592 1175 PRINTS Phytochrome signature 753 770 IPR001294 GO:0006355|GO:0009584
Acco03g1592 1175 SMART HisKA_10 930 996 IPR003661 GO:0000155|GO:0007165
Acco03g1592 1175 SUPERFAMILY PYP-like sensor domain (PAS domain) 805 907 IPR035965 -
Acco03g1592 1175 ProSiteProfiles PAS repeat profile. 657 728 IPR000014 -
Acco03g1592 1175 Pfam PAS fold 660 775 IPR013767 GO:0006355
Acco03g1592 1175 Pfam PAS fold 791 910 IPR013767 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1592 Acco-ChrAcco03 37421260 37428271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1592 61 1158 Histidine Kinase Gene Family AT4G18130 62.063 0.0 1442