Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1562 ATGGGTATCCAGGGTCTTTTGCCCCAGTTGAAATCCATTATGGTGCCAATCCACATCAAGCAATTCGAGGGTTGCTATGTAGCGGTCGATACATATTCTTGGCTCCACAAAGGTGCCTTTTGTTGCAGTACCGAGCTTTGCAAGGGGATGCCTACATCCAGACACATTGAGTATTGCATGCGTAAAGTAAATTTGCTGCGGCACTATAATGTTAAGCCTATTCTTGTATTTGATGGAGGCCTTCTACCAATGAAGAGCGAACAGGAGAACAAGCGTGCAAGGGTGAGAAAGGAAAATTTTGCACGTGCTGTTGAACATGAGTCACATGGAAATTCTGCTGCTGCTTTTGAGTGCTATCAGAAAGCTCTTGATATCTCACCTCTGGTTGCATGTGAACTAATTCAGGTGTTGAAGCAGGAGAATGTAGATTATCTTGTAGCTCCTTATGAGGCGGACGCCCAGATGACATTCTTGGCAGCTAGCAAACAGGTTGAAGCTGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGTCCAAGAATCATCTTTAAAATGGACAAGTTTGGTCAAGCTGTTGAGTTTCAGCATTCCATGCTTCAAAAGAACAAAGAGCTTAGTTTTGAAGGGTTCACCCGCCAAATGCTTCTTGAAATGTGTATATTGAGTGGTTGTGACTATCTGCAGTCCTTGCCAGGTATGGGTCTCAAAAGGGCTCATGCAATTATCAAGAGGTTCAAAAGTTATGACAAGGCTCTTAAGCATTTGAGATTCAATGGAGTTTCTGTCCCTTCCTCTTATGAAGAATCATTCAAGAAGGCTATATTGACTTTTCAATATCAACGAGTTTATAATCCATTCAATGAAGATATTGTTCATTTATCTAATGTGCCAGCTGATATTGGTGATGACTTAGACTTCTTAGGACCATATCCTTTATTTTGTAACTTAACCTTGAATACATCAATGCCTAAAGAAATAGCACAAGGAATAGCAAAAGGGGATCTTGATCCATTTACCAAAATGCCATTTCAGGTGGAGAATCTTACTGCTGGAACGGCAATGGAGAGGGCTTCAGAAATAAAAACACCACATTCCAAAACCACAAAGAAAAGGATAGATTTGCCTGTGCAGAAGAATGTTTTAACCAAGTATTTTTGTTTTGCATCTCTTGAAGCAAAAAGAAAGTTCATAGCACCTCGGATGTCACCTTCTGCTACAGATCAGAGTACACCGGGTTCCTTTTCTGTCATTTCCCAGGATCATGAGACTTTGGAAACTGCTGCTGCTAAAACAAACAGCTCTGCTTCTTCCTTAGTAGACTATAAAATTTTGGCCAATGTACCTCCTGTTAACAACCATGATGAAAGTGGTCTCTCCACCAAATTTTCAGAGTTGTTGGAATCTTCACGTTTCAGTGAGGACATGGCAGGTGAGAGGCGGAAAAATCCAGAACATACTATACTGCAAAAGCCCATAGAGCCAATTCATAAACCTTGTCTGGGATTGTATAAGGAGCATAAGGATTCGAATGTCAAAGATACTAGTGAGGGAAAGACTATGGAGGCAACAAGAAAGGTCCATGTAAGGAGTCCTAATTTTCAGCATGAACAAGTAGAAAAGGATAGTTGTGACTCAAAGGCAGATTGTATGATCAAAGATGATTTTGCCATTGATAAGCATAGAAATACTATATCTGACCGTGCTTTAGGCAAATTTGAAGACACTATTGAGAGAAAGACTCCGCTGGCAACAAGAAAGATCCTTGTAAGGAGTCCTTTTTTTCAGCCCAAGCAAGTAGACAATAATGATTGTGACCAAAAGCAAGATTGTTTGGTCAAAGATGATGTTGCCATTGGTAAACGCAGAAATACTATATCTGACATTGCTTTAAGCAAAGTCGAAGATAACAGAAAGACTCCGCAGGCAACAAGAAAGATCCTTGTAAGGAGTCCTTTTTTTCAGCATGAGCCAGTAGAAAAGAATAATTGTGACCAAGAGCAAGATTGTTTGGTCAAAGATGATATTGCCATTGGTGAGCCTAAAAATACCATATCTGACAACCATAGGACGAATAAAGTTCTGAAAAGGAAGATTTCCCCTGCTGACAGTGCTCAAAGAGAAAACTTGCAGCCCGGCAACATGCATTCTGCCTCAACTCTTCCTGATAATGGTGGCTGTGATCAAAATTCTGATAGAACATGTAAAGAGGGGAATTCTGAAGAGAAGTTTGGTGCAAATATTTCCCACCTAGGCCATTACTCAAAAATATCTGAGGAATCTTTAGAAAAGTTTACCTCAATGTTATCATCCTTCAGATACAACTCATCTGGTTCTCGTGCCAGCGGCCTCCGCGCTCCTCTGAAGGATGTTCAGAACACTTGTAACATAAGGCCAAAACCTGTGGACTTTGAACAGTTTGCATTTGTGCCAAAAAAACAAAAGACTGACAAAGTAACCATGGCAGTGACCTATGTTAGCTTTTTTCCCATTGGAAACAGTTAG 2505 0.404 MGIQGLLPQLKSIMVPIHIKQFEGCYVAVDTYSWLHKGAFCCSTELCKGMPTSRHIEYCMRKVNLLRHYNVKPILVFDGGLLPMKSEQENKRARVRKENFARAVEHESHGNSAAAFECYQKALDISPLVACELIQVLKQENVDYLVAPYEADAQMTFLAASKQVEAVITEDSDLIPFGCPRIIFKMDKFGQAVEFQHSMLQKNKELSFEGFTRQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKRFKSYDKALKHLRFNGVSVPSSYEESFKKAILTFQYQRVYNPFNEDIVHLSNVPADIGDDLDFLGPYPLFCNLTLNTSMPKEIAQGIAKGDLDPFTKMPFQVENLTAGTAMERASEIKTPHSKTTKKRIDLPVQKNVLTKYFCFASLEAKRKFIAPRMSPSATDQSTPGSFSVISQDHETLETAAAKTNSSASSLVDYKILANVPPVNNHDESGLSTKFSELLESSRFSEDMAGERRKNPEHTILQKPIEPIHKPCLGLYKEHKDSNVKDTSEGKTMEATRKVHVRSPNFQHEQVEKDSCDSKADCMIKDDFAIDKHRNTISDRALGKFEDTIERKTPLATRKILVRSPFFQPKQVDNNDCDQKQDCLVKDDVAIGKRRNTISDIALSKVEDNRKTPQATRKILVRSPFFQHEPVEKNNCDQEQDCLVKDDIAIGEPKNTISDNHRTNKVLKRKISPADSAQRENLQPGNMHSASTLPDNGGCDQNSDRTCKEGNSEEKFGANISHLGHYSKISEESLEKFTSMLSSFRYNSSGSRASGLRAPLKDVQNTCNIRPKPVDFEQFAFVPKKQKTDKVTMAVTYVSFFPIGNS 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1562 834 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Acco03g1562 834 ProSitePatterns XPG protein signature 2. 141 155 IPR019974 GO:0016788
Acco03g1562 834 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Acco03g1562 834 Gene3D - 209 281 - -
Acco03g1562 834 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 344 IPR036279 -
Acco03g1562 834 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Acco03g1562 834 Gene3D - 1 207 - -
Acco03g1562 834 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 483 IPR006084 -
Acco03g1562 834 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Acco03g1562 834 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Acco03g1562 834 SMART xpgn3 1 99 IPR006085 GO:0004518
Acco03g1562 834 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Acco03g1562 834 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Acco03g1562 834 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Acco03g1562 834 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Acco03g1562 834 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Acco03g1562 834 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Acco03g1562 834 MobiDBLite consensus disorder prediction 704 733 - -
Acco03g1562 834 SMART xpgineu 138 208 IPR006086 GO:0004518
Acco03g1562 834 FunFam Exonuclease 1, putative 1 207 - -
Acco03g1562 834 MobiDBLite consensus disorder prediction 699 739 - -
Acco03g1562 834 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Acco03g1562 834 FunFam exonuclease 1 209 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1562 Acco-ChrAcco03 36740735 36747640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1562 1 267 Core DNA Replication Machinery Family AT5G26680 24.643 6.14e-15 76.3