Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1553 ATGAAGGAAAATAATTTCCCAGTTGCTGAGAACTGTGTTCCTGCTTTGTTAACTCTTTTATCGCTTTTGTTATTCCCTTCCTCATCAGGTTTTTGTGAGGTTGATTTGAGGTTCATGGAGTTCCCAAATAATAATAATGATAACAATAATCAAGCCATGTCAGATTCATCATCCCCACAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATCGAGAACACAACAAATCGCCAGGTCACTTTCTGTAAGCGAAGAAATGGCCTCCTCAAGAAGGCTTATGAGCTCTCTGTGCTTTGCGACGCCGAGGTCGCCCTCATCGTCTTCTCCACTCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTGAAGGCAACAATAGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTGCTGGATCCACTTCTGAAGCTAATGCTCAGTATTACCAGCAAGAAGCACAAAAACTGCGTGCTCAAATTAATAACCTGCGCAATAACAACAGGCAAATGATGGGGGAGACATTGGCAGGTTTGAATGCTAGAGATCTCAAGAACTTGGAGGGTAAGTTAGAGAGAGGCATTAGTAGAATCCGTTCCAAAAAGAATGAGCTTCTGTTTGCAGAAATTGATTACATGCAGAAGAGGGAGGTAGACTTGCACAATAACAACCAGCTTCTTCGCGCTAAGATAGCAGAGAGTGAGAGAAACCAGGAGCAGCAGCAGCATAACATGAATATGATGGTATCAAGCTATGAGAATACAAGTGAGCATAATAATCAATTTGACTCAAGAGCCTTCTTCCAAGTCACTGGCTTACAACCTCACTACCCTTCCCATGACCACATCCCCCTTCAATTAGTGTACGTCGTCGATCGTAATATCCCTTTCATTCTCTCTCTCTCTCAAATATTGCCTTTGTGTGATGATCGATGTACTTGTGAGATGTGA 957 0.4263 MKENNFPVAENCVPALLTLLSLLLFPSSSGFCEVDLRFMEFPNNNNDNNNQAMSDSSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSSGAGSTSEANAQYYQQEAQKLRAQINNLRNNNRQMMGETLAGLNARDLKNLEGKLERGISRIRSKKNELLFAEIDYMQKREVDLHNNNQLLRAKIAESERNQEQQQHNMNMMVSSYENTSEHNNQFDSRAFFQVTGLQPHYPSHDHIPLQLVYVVDRNIPFILSLSQILPLCDDRCTCEM 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1553 318 PANTHER SERUM RESPONSE FACTOR HOMOLOG 63 245 - -
Acco03g1553 318 ProSitePatterns MADS-box domain signature. 65 119 IPR002100 GO:0003677|GO:0046983
Acco03g1553 318 MobiDBLite consensus disorder prediction 45 61 - -
Acco03g1553 318 SUPERFAMILY SRF-like 64 135 IPR036879 GO:0003677|GO:0046983
Acco03g1553 318 Coils Coil 186 206 - -
Acco03g1553 318 Coils Coil 226 246 - -
Acco03g1553 318 ProSiteProfiles MADS-box domain profile. 63 123 IPR002100 GO:0003677|GO:0046983
Acco03g1553 318 PRINTS MADS domain signature 65 85 IPR002100 GO:0003677|GO:0046983
Acco03g1553 318 PRINTS MADS domain signature 85 100 IPR002100 GO:0003677|GO:0046983
Acco03g1553 318 PRINTS MADS domain signature 100 121 IPR002100 GO:0003677|GO:0046983
Acco03g1553 318 SMART madsneu2 63 122 IPR002100 GO:0003677|GO:0046983
Acco03g1553 318 FunFam agamous-like MADS-box protein AGL11 75 158 - -
Acco03g1553 318 Pfam K-box region 145 233 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g1553 318 Gene3D - 75 141 IPR036879 GO:0003677|GO:0046983
Acco03g1553 318 MobiDBLite consensus disorder prediction 45 67 - -
Acco03g1553 318 CDD MADS_MEF2_like 64 138 IPR033896 GO:0000977|GO:0045944
Acco03g1553 318 ProSiteProfiles K-box domain profile. 149 239 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g1553 318 Coils Coil 149 176 - -
Acco03g1553 318 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 72 119 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1553 Acco-ChrAcco03 36603720 36611359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1553 54 290 MADS-box Gene Family AT3G58780 63.223 1.57e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco03g1553 K-box 4.1e-26 No_clan