Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1534 ATGGAGGAAACATGCAAAAAGGTGTTTCAATCTTATCAAGCACTTGGTGGTCACAAAGCGAGTCACAAGAAGATCAAAGTGGAGCTCGAGAATCATAATATATTTGGAGGCACTTCATCTTCTTCTTCAACGTTCCATCAGAAAACTCATGAATGCCCAGTCTGTTTCAGAGTGTTTGCTTCAGGTCAAGCTCTTGGGGGACACAAAAGGACCCATCTTACTGGTTCGTCGACATTACCACCCACTCGAGCTTCCACTAAACTGGTTGGAAATTTCACAGATCTTAACCTTCCTGCTCTGACGGCGGACGAAGACGATATAAGCCAAATCGACAATTCTGGAGTTTCAGATGCAGAATTCCTCGTTGATCACATCAGACAGTGA 384 0.4401 MEETCKKVFQSYQALGGHKASHKKIKVELENHNIFGGTSSSSSTFHQKTHECPVCFRVFASGQALGGHKRTHLTGSSTLPPTRASTKLVGNFTDLNLPALTADEDDISQIDNSGVSDAEFLVDHIRQ 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1534 127 Pfam C2H2-type zinc finger 4 24 - -
Acco03g1534 127 Pfam C2H2-type zinc finger 50 73 - -
Acco03g1534 127 Gene3D Classic Zinc Finger 3 72 - -
Acco03g1534 127 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 72 IPR013087 -
Acco03g1534 127 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Acco03g1534 127 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 3 122 IPR044303 GO:0006355
Acco03g1534 127 SUPERFAMILY beta-beta-alpha zinc fingers 46 74 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1534 Acco-ChrAcco03 35960804 35962773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1534 3 110 C2H2 Transcription Factor Family AT3G60580 45.833 1.99e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco03g1534 zf-C2H2_6 1.5e-10 CL0361