LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco03g1507	ATGGATGAAGCTCAGGTTGGCTCTGGTTCCTTGCCTCCTTTCTTGGCGAAGACCTATGAGATGGTGGAAGATCCTTCCTCGGACTCGGTAGTTTCTTGGAGCAGCTCTAATAGAAGTTTTGTGGTATGGGATCCGACAGAATTTGCGAGGGACTTGTTACCAAGATTCTTTAAGCATAATAATTTCTCCAGTTTCATCAGGCAGCTGAACACTTATGGCTTTAGAAAAATTGACCCAGAACGGTGGGAATTTGCGAATGATGATTTTATAAGGGGTCAACCACATCTATTGAAGAGCATCCATAGGCGAAAACCAGTTCATAGCCATTCTTTACAGAATCAGCAGGGACATGGATCTTCTTCTCTATATGAATCAGAAAGGCAGAATTTCATAGATGAAATAAGGAGGCTTAAACAAGATAAAGAAGTACTTGCTTTAGAATTACAGAGATATGAACAGGAATGTCAAACTTGTGAGATACAAATACATTGCTCAAACGACCGTTTGGAAAAGTTGGAACAGAAGCAACAACGGATAGTATCTTTACTTTCTCAAGCCTTGCATAAACCTGGGGTTGCTTTAAATCTCTGGTCACTTTCAGAATCCCTGGATAGAAAACGAAGGTTGCCAAAAGGCGGCGGGTCCTTTTGTGATGAAGCAAGCATTGAAGATCCTATGGAGACTTCCCAAATGTCGCCTAGAGAAATCTCTATACTGACGTCAATGTTGGAGCGATTTAATCAGCTGGAATCATCTCTTTTATTCTGGGAGAGCATTGCACATGATTATGATGATACCTTTGTTCAAAGTTCTTCAAACTTGGACTTTGATGAGTCTACAAGTTGTCCTGATAGCCCATCTATATCGTGTGTGCAACTAGATATTGAAATTCAGCCGAAGTCATCAGGAATCGACATGAATGCTGAGCCTGCTGTATCTGCTGTTCCTGAGGCTGTTACGCCGAAAGAACAAGTAGTGGAAACAGCTACAGTGGCGACTGGTGTTAATGATGTCTTCTGGGAACAGTTCTTGACAGAGAATCCAGGTTCATCAGAGACACCAGAGGTGCAGATGGAAATGAAGGATTCTGATGTCAGAAAGAATGAAGGAAAACCTATTGAAGTAAATAGATTTTGGTGGAATATGCGGAATGTAAATAATCTTCCAGAGCAGATTGGGCATCTTAGTTAA	1191	0.4131	MDEAQVGSGSLPPFLAKTYEMVEDPSSDSVVSWSSSNRSFVVWDPTEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPERWEFANDDFIRGQPHLLKSIHRRKPVHSHSLQNQQGHGSSSLYESERQNFIDEIRRLKQDKEVLALELQRYEQECQTCEIQIHCSNDRLEKLEQKQQRIVSLLSQALHKPGVALNLWSLSESLDRKRRLPKGGGSFCDEASIEDPMETSQMSPREISILTSMLERFNQLESSLLFWESIAHDYDDTFVQSSSNLDFDESTSCPDSPSISCVQLDIEIQPKSSGIDMNAEPAVSAVPEAVTPKEQVVETATVATGVNDVFWEQFLTENPGSSETPEVQMEMKDSDVRKNEGKPIEVNRFWWNMRNVNNLPEQIGHLS	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco03g1507	396	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco03g1507	396	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco03g1507	396	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco03g1507	396	MobiDBLite	consensus disorder prediction	346	368	-	-
	Acco03g1507	396	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco03g1507	396	MobiDBLite	consensus disorder prediction	103	122	-	-
	Acco03g1507	396	Gene3D	-	8	104	IPR036388	-
	Acco03g1507	396	SUPERFAMILY	"Winged helix" DNA-binding domain	10	103	IPR036390	-
	Acco03g1507	396	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco03g1507	396	Coils	Coil	127	175	-	-
	Acco03g1507	396	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	9	251	IPR027725	-
	Acco03g1507	396	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Acco03g1507	396	FunFam	Heat shock transcription factor 1	7	104	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco03g1507	Acco-ChrAcco03	35490789	35492101	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco03g1507	1	396	HSF	AT4G18880	50.122	1.16e-112	333

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Acco03g1507		HSF_DNA-bind	4.6e-32	CL0123