Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1504 ATGGCTTCGGGGGCTATATTTTCGTCGTTGCGGCGGAGGAGGTCGCCGACGTTGGAAGCCTTCCTTGCTCCGGTTGACTTATCCGATGTTTCTTTGGTTCAAACCCTCGTCTCTGTGGCTAGCGAGCTCGTCACGTGCTTTTCCGGACGCTCTTTCTTCTTCCAGCGCAAGAACTCGCGGTCGCTCATTCGAAAGGTCGAGGTCTTTAAGTTACTTTTGGAATATCTGACGGACACTGGCGAGTGTATTCCGCCGACGGCGGTTCTCTGTTTGAAGGAGCTTTATTTGCTATTGTACCGGTCGAAGATTCTTCTTGACTATTGTGCACAATCGAGTAAGTTATGGCTGTTGCTCCAGAACCATTCAATATCTGGCCATTTCCATGATTTGAACCAGGAAGTATCGACCATTCTGGATGTATTTCCTATTAAAGATGTCAAATTGAGTGAGGATGTCAGCGAACAGATTGAGCTGTTGAAAAGACAGTCAAGGAAGGCTAAGTTATTCATAGACCAGAAAGATGATGATCTCAGGATTCGCTTCTTGTCTTTTCTTGATGAATTTGAAAAAGGGAAAGTCCCTGACTCATCAGAATTAAGGTTTTTATTTCTGGAGAAATTGAAGATTCTAGATGCTAGAAGTTGCAGAAGTGAAATTCAGTCTCTGGAGGAGCAGATTGTGCACCATGAGGGAGACGTTGAACCAACAATTTCTGTGCTTAATGGGCTTGTTGCTTTGACACGGTATTGCAGGTTTTTGCTCTTTGGATTTGAGGAAGATGAGCTAGAGTTGAACAGTGGGAATAAGAGAAAACCCAAAAGGGGATTGATTAGTCAAGAAATTGCTGGAACGTTTATAAGTATACCCAAGGATTTCTTCTGTCCAATAACATTGGATCTTATGCGTGACCCAGTTATAATTTCCACAGGACAGACATATGATCGAAGTTCCATATCCCGGTGGATAGAGGATGGCCACTGCACTTGTCCAAAAACTGGGCAAATGCTTTCTAGCACACGCCTTGTTCCTAATCGATCTCTTAGGAATTTGATCATGCAATGGTGCGCTGCACATGGAAATCCCTACGATCCACCAGAGGTCATCGATCCTTCAGTTGAATTTTTTGCATCAACTTCTCCTACCAAGGCTGCCCTTGAAGCCAACAGAGCAACTGCATCATCTCTCATTCAGCAGCTTGCAGATGGGTCACAAGTTGCAAAGACTGTAGCTGCTCGGGAGATTCGATTGCTAGCAAAAACAGGAAAAGAAAATCGGGCCTTCATTGCAGAAGCCGGGGCTATTCCTCATCTTCAAAAGTTACTCTCCTCTTCCAATGCGGTTGCCCAGGAGAATTCTGTGACTGCATTACTCAACCTATCAATTTATGAGAAGAACAAAAGTCGGATAATGGACGAGGAAGGATGTCTGGCTTCAATAGTTGACGTGTTGAGATTCGGACAAACAACAGAGGCAAGGGAAAATGCTGCCGCAACATTGTTCAGTCTCTCTGCTGTCCATGCATACAAGAAGAGAATTGCAGATAATGTGGGAGCTGTGGAAGCCCTGGCTGATTTGTTGCAAGAGGGAACGCCAAGAGGGAAGAAGGATGCTGTGACAGCTTTGTTTAATCTTTCCACCCACAATGAGAATTGTGCAAGAATGATTGAAGCAGGGGCTGTTACAGCTCTAGTTGTGGCTTTGGGAAATGAAGGAGTTGCCGAGGAAGCAGCAGGTTCCTTGGCCTTGATTGTTCGCCATCGTATCGGGGCCAAGGCTGTGGTTAACGAGGAAGCAGCTGTAGCTGGATTAATTGGAATGATGCGGTGTGGGACACCAAGAGGTAAAGAGAATGCAGTTGCGGCCTTGCTTGAATTGTGCAAGAGTGGGGATGCGGCTGCAACTGAAAGGGTGATTAGGGCACCGGCTTTGGCAGGATTGCTTCAAACCCTGCTTTTCACCGGGACAAAGCGGGCAAGAAGAAAAGCAGCTTCGTTGGCTAGGGTGTTTCAGAGATGTGAAAATGCATCTTTGCATTATGGTGGTTTAGGTGTAGGGTATGCATATGCTGGCAATTCAGCTGCAGACAGGGATACGAGCTTTGCCGGTGATGTATCTGTACCAATGTCCATTTCTGTACCTGTTGTGTAG 2148 0.4595 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVSLVQTLVSVASELVTCFSGRSFFFQRKNSRSLIRKVEVFKLLLEYLTDTGECIPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEVSTILDVFPIKDVKLSEDVSEQIELLKRQSRKAKLFIDQKDDDLRIRFLSFLDEFEKGKVPDSSELRFLFLEKLKILDARSCRSEIQSLEEQIVHHEGDVEPTISVLNGLVALTRYCRFLLFGFEEDELELNSGNKRKPKRGLISQEIAGTFISIPKDFFCPITLDLMRDPVIISTGQTYDRSSISRWIEDGHCTCPKTGQMLSSTRLVPNRSLRNLIMQWCAAHGNPYDPPEVIDPSVEFFASTSPTKAALEANRATASSLIQQLADGSQVAKTVAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLSSSNAVAQENSVTALLNLSIYEKNKSRIMDEEGCLASIVDVLRFGQTTEARENAAATLFSLSAVHAYKKRIADNVGAVEALADLLQEGTPRGKKDAVTALFNLSTHNENCARMIEAGAVTALVVALGNEGVAEEAAGSLALIVRHRIGAKAVVNEEAAVAGLIGMMRCGTPRGKENAVAALLELCKSGDAAATERVIRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAYAGNSAADRDTSFAGDVSVPMSISVPVV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1504 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 361 IPR013083 -
Acco03g1504 715 Gene3D - 511 667 IPR011989 -
Acco03g1504 715 Pfam U-box domain 288 359 IPR003613 GO:0004842|GO:0016567
Acco03g1504 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Acco03g1504 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Acco03g1504 715 SUPERFAMILY RING/U-box 276 362 - -
Acco03g1504 715 SUPERFAMILY ARM repeat 393 669 IPR016024 -
Acco03g1504 715 PANTHER U BOX DOMAIN-CONTAINING 57 672 - -
Acco03g1504 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Acco03g1504 715 Gene3D - 374 510 IPR011989 -
Acco03g1504 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Acco03g1504 715 Coils Coil 212 232 - -
Acco03g1504 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Acco03g1504 715 SMART arm_5 506 546 IPR000225 GO:0005515
Acco03g1504 715 SMART arm_5 421 461 IPR000225 GO:0005515
Acco03g1504 715 SMART arm_5 462 504 IPR000225 GO:0005515
Acco03g1504 715 SMART arm_5 547 585 IPR000225 GO:0005515
Acco03g1504 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Acco03g1504 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Acco03g1504 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1504 Acco-ChrAcco03 35458920 35461067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1504 1 714 U-box Gene Family AT1G29340 69.494 0.0 956