Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1416 ATGAGGCCCGTTTTTAGATTCTTGATTCTTCTACCTCTGCTTGCACTTGTTGAATCTTCTTCCTCCTCCCCCTGCAAACTTAGTCCACAAGACCTCGACCTAGTGTCCAAGGCCTTCAAATCAGTCTCCGGATTCAACGTTTCCTGGTTATCTCACTGCTCCGTCGTCGACGATCAGTTCGGGGCCATAAGGCTTAGCTCCAAGAATCTCCGTGGGGCTATTTCGTGGAAGTTTATGAGGAAAGTTTCAAACTTGCAGGTTCTTGATCTTTCTGGGAATTCTCTTCAAGGTCAAGTCCCTGGTTGGTTCTGGGCAAAATCGAGCTTACTGGAGGTCAATCTTTCCAATAACAGGTTCGGAGGCACCATTAATGGCTCCTTCGTTTCTTCTCTTCAAATGCTTAATCTCTCACACAATAGGTTCACAAATCAAGTTCAGCTTTCTGGGTTTTCTAAGCTGAAAGTTCTTGACCTTTCTCATAACAATCTGAAATACCTCCCTTTTGGGTTTCAGAAGCTTACCAACCTCAACCACCTTGACCTATCCAACAGTAAAATCAAAGGAAATGTCAAACCTGTCTCTGCTTTGAACTCATTGAGTTACCTGGACCTCTCAAATAACGAGTTGAATGGTACTTTCCCTTCTGATTTCCCTCATCTTCATACCCTTCATTTCTTGAACATCTCTCACAACAATTTCAGAGCTGTAGTTCGCTTCAATGCGTACGAGAAGAAATTCGGCAAATCAGCTTTCCTTCACGCCGGCGCCAACTTCAATTACAATGCCTCCAAAACGGCGCCGTGTCATCACCCTTCGTTTCACTCTACGAAACGAAACCCGATTAAGAAAAGACCCAAATCAAAATCTAAAAGACTGATACTCTCTGTGTGCTATGCTTCAGTAATCGTCGTTGTTCTATTGTGTATTTCTATATTCTGCTTCTACAGAAAGAAGAGACGATTGGCTAAGAGAAATAAATGGGCGATCTCGAAGCCAGTCCCACCATTGCCTTTCAAGGTTGACAAATCTGGACCGTTTGCTTTCGAGACTGAATCAGGTACGTCGTGGGTGGCTGATCTGAAGGAGCCATCGTCGGCGCCGGTGGTGATGTTCGAGAAGCCATTGATGAACCTCAGCTTCATGGACCTGATCGCTGCCACGTCACACTTCGGCAAGGACTCTCTGCTCGCCGAGGGGAGGTGTGGTCCCGTCTACAGAGCCGTCTTACCCGCTGGCGGAGACATCCACGTGGCAATCAAGGTTCTGGAGAACGCCAGAGACGTCGATCATGACGACGCCGTCGAGTTGTTCGTTGAACTCTCAAAGCTGAAGCACCCAAACGTCCTGCCTCTCTCCGGTTACTGTATTGCGGGCAAGGAGAAGCTGGTGTTGTACGAGTTCATGTCGAACGGCGATTTAGGAAGGTGGCTTCATGAGTTGCCAACGGGGACTACTAACGTGGAGGATTGGAGTGGCGACACGTGGGAGATTCAAAACGGTGGCGGGTCTCAGGCGCCCTATCCGGAAACAATGGGTTGGGGAACACGACACCGTATCGCCGTCGGGATAGCACGTGGCCTGGCATATCTCCACCATGCCGGATCAAAGCCCGTCGTGCACGGCCACCTGGTCACTTCCAATATCTTACTCGCCGACGACTTTGAGCCCCGAATCGCAGATTTTGGGTTCCGGAAAATCGGTCAGCAAGATAAGCCGAATTGCAAGACGGAGACGGACGTTTACTGCTTCGGTGTCTTGCTGATGGAGCTCTTAACGGGGAGGGCCGGCACGGCGGAGACAGTGGTGTGGGTGAGGAAGATGGTGAGGGAGGGAAATGGGGTGAGCGTGTTGGATGAGAGGCTGAAAGATGGCGGCGGCGAGTCGGAGAGGGAGATGGCGGAGAGCCTTCGAGTGGCGTTCTTGTGTACGGCGGAGTCACCGGGGAAGAGGCCCACCATGCAGCAAGTCCTCGGTTTGCTCAAAGACATTTATCCAGTTAACAGGGCTTGTGTAACTTAA 2019 0.5002 MRPVFRFLILLPLLALVESSSSSPCKLSPQDLDLVSKAFKSVSGFNVSWLSHCSVVDDQFGAIRLSSKNLRGAISWKFMRKVSNLQVLDLSGNSLQGQVPGWFWAKSSLLEVNLSNNRFGGTINGSFVSSLQMLNLSHNRFTNQVQLSGFSKLKVLDLSHNNLKYLPFGFQKLTNLNHLDLSNSKIKGNVKPVSALNSLSYLDLSNNELNGTFPSDFPHLHTLHFLNISHNNFRAVVRFNAYEKKFGKSAFLHAGANFNYNASKTAPCHHPSFHSTKRNPIKKRPKSKSKRLILSVCYASVIVVVLLCISIFCFYRKKRRLAKRNKWAISKPVPPLPFKVDKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLSFMDLIAATSHFGKDSLLAEGRCGPVYRAVLPAGGDIHVAIKVLENARDVDHDDAVELFVELSKLKHPNVLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGTTNVEDWSGDTWEIQNGGGSQAPYPETMGWGTRHRIAVGIARGLAYLHHAGSKPVVHGHLVTSNILLADDFEPRIADFGFRKIGQQDKPNCKTETDVYCFGVLLMELLTGRAGTAETVVWVRKMVREGNGVSVLDERLKDGGGESEREMAESLRVAFLCTAESPGKRPTMQQVLGLLKDIYPVNRACVT 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1416 672 ProSiteProfiles Protein kinase domain profile. 390 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g1416 672 Pfam Protein tyrosine and serine/threonine kinase 394 570 IPR001245 GO:0004672|GO:0006468
Acco03g1416 672 Pfam Leucine rich repeat 71 119 IPR001611 GO:0005515
Acco03g1416 672 Pfam Leucine rich repeat 130 186 IPR001611 GO:0005515
Acco03g1416 672 Gene3D Transferase(Phosphotransferase) domain 1 504 572 - -
Acco03g1416 672 Gene3D Ribonuclease Inhibitor 11 250 IPR032675 -
Acco03g1416 672 Gene3D Phosphorylase Kinase; domain 1 350 467 - -
Acco03g1416 672 Gene3D Transferase(Phosphotransferase) domain 1 573 669 - -
Acco03g1416 672 ProSiteProfiles Leucine-rich repeat profile. 152 174 IPR001611 GO:0005515
Acco03g1416 672 FunFam Putative LRR receptor-like serine/threonine-protein kinase 351 467 - -
Acco03g1416 672 SUPERFAMILY Protein kinase-like (PK-like) 367 660 IPR011009 -
Acco03g1416 672 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 30 663 - -
Acco03g1416 672 SMART LRR_typ_2 150 172 IPR003591 -
Acco03g1416 672 SMART LRR_typ_2 82 105 IPR003591 -
Acco03g1416 672 SMART LRR_typ_2 196 219 IPR003591 -
Acco03g1416 672 SUPERFAMILY L domain-like 62 236 - -
Acco03g1416 672 PRINTS Leucine-rich repeat signature 196 209 - -
Acco03g1416 672 PRINTS Leucine-rich repeat signature 153 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1416 Acco-ChrAcco03 33071824 33074371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1416 38 663 Receptor kinase-like Gene Family AT5G07280 31.744 2.21e-73 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Acco03g1416 PK_Tyr_Ser-Thr 1.4e-21 CL0016