LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco03g1371	ATGAAGCAGCACAGCCGATTGGCCATTTTGTTATTATTCTTCTACATCTCAACTGTTTTTGCTGATCCATGCACAGTAACAAGGTGCGGCGCTGATGGACCAGAAATTCGATTCCCCTTTAGGCTCAAAGGAAAGCAGCCACAATGGTGTGCTTATAATTCAAGCTTTGATCTTTTCTGTTCTGAAACAAACACCACAGTTCTCGAGCTGCCATTCTCTGTCAAGCTTATCGTACAAGTCCTCGACTATAAATCACAAGTCATTACTGTGTCTGACCCTGATGGATGCCTTGCTCAACTCAATTTATATGCATCTCCTTTTCGGTCAAATGATTATTCTGAATCAAGCCGATATGCGCTATTCAATTGCTTAGGACCATCTCGTAGAAATTCAGAAATTGGTCAATGGGGGAACTTTTCTTGCCTTGATGTTCCTGGCTATGAAGTTTTAGCTATACCATATGCAGTGAAAATTATGAACTATCCTCTTCTATCATGCACAAGAGTTCATGGCTATGTGTCAGTCCCTAATTCATTTTACAATTACATTTTCAATAACCTCATATATCTGTATTGGACAGAGCCAGATTGCAGGAAGTGTGAAGAAGATGGAGGCCAGTGTAAATTGAGAGAAAACAAAGCTGAACGTGAACCTGAATGTTTCCAAAGGCCCCATAAAGGTCCATTGAAAAAGATAGTACTCGCTGGTGAAATCCTAGGCCCGTTTCTGCTCATATTTGTTGGCTTTATTGTTTATTGGGTCCATGCAGCTTGCGTGGAGAGTCAAGGTTACATAAAAATTAAACAGTTTTTGGAAGACTACAAAGCACTTAGGCCTGCTAGATACTCCTATGCAGATATAAAGAGGATCACAAATCAGTTCAAGGATGAACTTGGACAAGGAGCCTATGGAACTGTGTTTAAAGGGAAGCTATCTAATGAGATTCAGGTGGCTGTCAAGCTTCTGAACACTTCAACAGGGAATGGACAAGAGTTCATCAATGAAATGGAGACCATGTGCCAAATTCACCATGTCAATGTGGCTCGCTTGGTTGGCTACTGTGCGGATGGATTCAAACGAGCCTTGGTTTATGAGTTTTTACCCAATGGCTCATTGCAGAAATTCATAACTTCAGCTGATAGAGAAGACCTTTTCCTGGGCTGGGGAAAGCTTCATGATATTGCTCTTGGCATAGCCAAAGGAATTGAGTATCTTCATGAAGATTGTGACAAACGAATCCTCCACTTTGATATCAAACCTCATAATATTCTTTTAGATGACAAATTCACACCAAAGATATCTGATTTCGGTTTGGCCAAACTTTGTTCTAAGGATCAAAGCATTGTGTCAATAACAACAGCTAGGGGAACTTTGGGTTACATTGCACCAGAGATATTCTCTCGAAACTTTGGCAATGTATCTTATAAATCAGATGTTTACAGTTATGGAATGTTGGTCCTTGAAATGGTTGGAGGAAGGAAAATCACAGATGTCACAGAAGAAAATGGCGACCAAGTTTACTACCCACAATGGATTTATAATCTTCTAGAGAACAACGAAGACATACAAATTCATATAGAAGGAGAGGAGGACACTAAAATTGCAAGGAAGCTATCTATTGTTGGACTTTGGTGCATTCAATGGCATCCGGCAAATCGTCCAACCATGAAAAATGTGGTTCAAATGTTGGAAGGGGTTGACGGAAAGCTAATTATGCCTCCCAATCCTTTTGGTTCTACACACGCAACCAGAACAAGGGCTATTAGTGGAGTAAGGCGATTGAAACCAGAGCTTTCTATTATTTCTAAGATAGAGTCAAGTTGA	1824	0.403	MKQHSRLAILLLFFYISTVFADPCTVTRCGADGPEIRFPFRLKGKQPQWCAYNSSFDLFCSETNTTVLELPFSVKLIVQVLDYKSQVITVSDPDGCLAQLNLYASPFRSNDYSESSRYALFNCLGPSRRNSEIGQWGNFSCLDVPGYEVLAIPYAVKIMNYPLLSCTRVHGYVSVPNSFYNYIFNNLIYLYWTEPDCRKCEEDGGQCKLRENKAEREPECFQRPHKGPLKKIVLAGEILGPFLLIFVGFIVYWVHAACVESQGYIKIKQFLEDYKALRPARYSYADIKRITNQFKDELGQGAYGTVFKGKLSNEIQVAVKLLNTSTGNGQEFINEMETMCQIHHVNVARLVGYCADGFKRALVYEFLPNGSLQKFITSADREDLFLGWGKLHDIALGIAKGIEYLHEDCDKRILHFDIKPHNILLDDKFTPKISDFGLAKLCSKDQSIVSITTARGTLGYIAPEIFSRNFGNVSYKSDVYSYGMLVLEMVGGRKITDVTEENGDQVYYPQWIYNLLENNEDIQIHIEGEEDTKIARKLSIVGLWCIQWHPANRPTMKNVVQMLEGVDGKLIMPPNPFGSTHATRTRAISGVRRLKPELSIISKIESS	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco03g1371	607	SUPERFAMILY	Protein kinase-like (PK-like)	277	564	IPR011009	-
	Acco03g1371	607	Pfam	Wall-associated receptor kinase galacturonan-binding	24	92	IPR025287	GO:0030247
	Acco03g1371	607	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	266	581	IPR045874	GO:0004672
	Acco03g1371	607	Gene3D	Phosphorylase Kinase; domain 1	267	366	-	-
	Acco03g1371	607	ProSiteProfiles	Protein kinase domain profile.	292	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g1371	607	SMART	serkin_6	292	563	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g1371	607	FunFam	serine/threonine-protein kinase PBS1-like	265	366	-	-
	Acco03g1371	607	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	413	425	IPR008271	GO:0004672\|GO:0006468
	Acco03g1371	607	ProSitePatterns	Protein kinases ATP-binding region signature.	298	320	IPR017441	GO:0005524
	Acco03g1371	607	FunFam	PR5-like receptor kinase	367	574	-	-
	Acco03g1371	607	Gene3D	Transferase(Phosphotransferase) domain 1	367	569	-	-
	Acco03g1371	607	Pfam	Protein kinase domain	295	561	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco03g1371	Acco-ChrAcco03	31883686	31885689	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco03g1371	196	576	Receptor kinase-like Gene Family	AT1G66910	44.000	1.66e-108	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Acco03g1371		Pkinase	2.4e-47	CL0016