Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1223 ATGTCAGCCTTTGCTTCTCCGATCACCGCCGATGACGACGACGACCATTCAGATATTCAGTTCTACGGCCCCGACGCCGATGCCATTGCCTCCGATAAGCCCGATAACGGTCAGAAAGCCATGAGGTCTGTGAGGCCAGAAGGGAACTTGATATCAGTTTCACCTGCAGTAGGAAACCTTGAAGTGAAGTCACCATCTTATTTGCCTCTTATGGAAGGGAATGCAGCCATGGCTAAAGTTTGTGTTCCTTCATACAATGTACCTACTGTTAGAAAGAAAGATTTTCAACTGAAACGTAAGCTTTCAAGTAGTCCAGAATCAAGAAAAAATATGGATTTGGAAGATGACAAAAATCAAGGATTAGAAACTGATGTTGAAAATTCTGGATCCGTTTCATGGCAGAAAACCTCTGGAGGATACAGTGAACCAAGTTGCAATTACACTTCATATTTATGTGGTGTTAACAAGGATATAAGTTATGGGCCTTCCAGGTCATTTACAGATTTTGGAAAAGATGGGACTATTGACTTGCAGAGAGAATGCTTTGTTGAGAAGGCTAGTGGTGATCAAAATCATATAAAGCATATCAGGCATTTGATCATGCAATCAGGAGATGCTATGAGCCCAACGACATCAAGGCATCCTTCTCCTAACTTGAGGACCAGAGATCTGCCTCCCTGTGATGAGACTAAAGTTGGAAACAAGCATCATGCAAACATATGTGCTTTTTATGCCAAAGGATGGTGCATCAAGGGTAATTCTTGCAGTTTTGTTCATAAAAACGATCCTGAAAATAAATCAGGCCAGCAGATTGAAGGAGAATTGGTTACTCAAAATTGGAAGAGAGAAGTGCAACAAGAGGAAGGTATTGGAGATGATATCAAGAGATCAATGGTGCCTTATACTCAAGTTCCATTGTCTGCTACACAAGAAAGAACACCTCTGGATTCATCTGAATTTTCCTTAAACCCAATAATCCACAGAGAAGTAGGCCCAGCCTGGCATCGAAATAAAAGTTGGTCTGTCTCTTTCCCTTCTGGTCTAACCCATGTAGAGGGAATGACTACCACTCAAGCTGAGGGTCATTCACCCAATTTTAACATGTCTACACACCTTCCAACTACATGTATGTCACTGTCCCACCATATTCCTTCCCAATCAGGATGTCCATTGTCTTTCAGTGGATCGGTAGGTGAAAGTTCTATAGATTCTCAACAACTATCGAGCAGTGGCATGGCATATTATGACAGCAGATCCACTTTCTCTGGTTCTAGAAGGGAAGGTTTGGCTCTAAGTATTTCATTTGGTGTTCCATCACACCCAACTGGATGTAAATTAAAATTCTCTTCGTATGACTGGGAGCCATCTATACCTTTCAAACCATCTTTTTTTATTACTTCATCAAGTAGATCATCTGTAGAAGATCAAAAAGACCCTTTTCATGGTACCGCAGAGATATCAAATTTAGGGGATGGGTCCTTGAAAGCTTTCATTTTACCTCAAAGGTCACCCATTCAGACTTCATGGGTTGCTACAAATGGTGGGTCTGTTGAAGCTGCAAGTCAGGGATCAGATCTTCATAGTGCCAAAAGTTCTGTATCTTCTCATAATGGATGTAATAAAACTGAGCCGGAGAAGAGTTGTGTTCCTCATGAAAAAGGTTTTGTTGCAACTGAAACAGATAGAATAGCAGCAAGATATCTAAATTGCGATGTTGGAAGGGTCGGCATGGGACTCAAGACCTTTGAAGATGTTAAAAATATAGGAAAAGAACAAACTGGTGTTGCTCGACCTCAAGTTGAAGTAACAGAGTACAACAAACAAAGAGTAGACAGGGAAAAGAAAAACAGTGAAATGGTTAATAATCTTCAGAAGGATGTTGGCATGCAGATAGAATCAATGGAACTGAGAAATTTCCGTTTCGCACTTGTTGATCATGTGAAAGAGATTTTAAGACCAGTTTGGCAAGAGGGTCACCTCAGCAAGGATGTGCATAACATGATTGTTAAAAAATCAGTTGACAAGATTATTAGCGCCTTACAGCGTCAGCAAATTCCACCAAACGAGGAATCTATCAAGAAGTACCTTTCTTTTTGTCATGTGAAAATTGCAAATCTGGTCAAGGAGTATACCAGTATATATGGTGAGGTTTGA 2154 0.4067 MSAFASPITADDDDDHSDIQFYGPDADAIASDKPDNGQKAMRSVRPEGNLISVSPAVGNLEVKSPSYLPLMEGNAAMAKVCVPSYNVPTVRKKDFQLKRKLSSSPESRKNMDLEDDKNQGLETDVENSGSVSWQKTSGGYSEPSCNYTSYLCGVNKDISYGPSRSFTDFGKDGTIDLQRECFVEKASGDQNHIKHIRHLIMQSGDAMSPTTSRHPSPNLRTRDLPPCDETKVGNKHHANICAFYAKGWCIKGNSCSFVHKNDPENKSGQQIEGELVTQNWKREVQQEEGIGDDIKRSMVPYTQVPLSATQERTPLDSSEFSLNPIIHREVGPAWHRNKSWSVSFPSGLTHVEGMTTTQAEGHSPNFNMSTHLPTTCMSLSHHIPSQSGCPLSFSGSVGESSIDSQQLSSSGMAYYDSRSTFSGSRREGLALSISFGVPSHPTGCKLKFSSYDWEPSIPFKPSFFITSSSRSSVEDQKDPFHGTAEISNLGDGSLKAFILPQRSPIQTSWVATNGGSVEAASQGSDLHSAKSSVSSHNGCNKTEPEKSCVPHEKGFVATETDRIAARYLNCDVGRVGMGLKTFEDVKNIGKEQTGVARPQVEVTEYNKQRVDREKKNSEMVNNLQKDVGMQIESMELRNFRFALVDHVKEILRPVWQEGHLSKDVHNMIVKKSVDKIISALQRQQIPPNEESIKKYLSFCHVKIANLVKEYTSIYGEV 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1223 717 ProSiteProfiles Zinc finger C3H1-type profile. 240 262 IPR000571 GO:0046872
Acco03g1223 717 MobiDBLite consensus disorder prediction 1 47 - -
Acco03g1223 717 MobiDBLite consensus disorder prediction 204 218 - -
Acco03g1223 717 MobiDBLite consensus disorder prediction 96 135 - -
Acco03g1223 717 MobiDBLite consensus disorder prediction 204 225 - -
Acco03g1223 717 Gene3D - 228 288 - -
Acco03g1223 717 MobiDBLite consensus disorder prediction 96 122 - -
Acco03g1223 717 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 210 714 - -
Acco03g1223 717 SUPERFAMILY CCCH zinc finger 235 260 IPR036855 GO:0046872
Acco03g1223 717 MobiDBLite consensus disorder prediction 518 542 - -
Acco03g1223 717 MobiDBLite consensus disorder prediction 518 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1223 Acco-ChrAcco03 28354458 28359352 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco03g1223 None None None