LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco03g1219	ATGTCTTCAGATCCCAGAGTGAAAGGGAAAGGCAAATCAGCTCCAATTATTGTGATAGTTGTGGTTTGTATCGCTGGTATGGCAATAATTTTTTGTTTCGCCTACTACGTCTTAAAAAATCCCATGAAGAAGAGTCGTAGGGCTGTTCTCAGACAAAAATACTTTGGAAGTGAAGGCACCAGTTTAGAGCCTCTGGAATTCAATTTGGCTACTATTGAATCTGCGACAAATAAATTTTCAGAGGAAAATAGACTAGGCAAAGGTGGCTTTGGACAAGTTTACAAGGGTATTCTTTCAAGCGGCCAAAATATAGCTGTGAAGAGACTTTCAGAAGGTTCTGGTCAAGGTGTAGAAGAATTCAAGAATGAAGTTTTATTAATAGCCAGACTCCAGCATAGAAATTTGGTGACATTATTAGGATTCTGTATAGAAGAGCAAGAAAAAATACTTGTATATGAATATGTTTCCAATCGAAGCTTGGACTACTTTTTATTTGGTTCCGACAGAAGCAAAGTACTAAATTGGTTGGAGCGATGTAAAATCATAGGAGGAGTTGCTCGAGGAATTCTTTATATTCATGAACATTCTCGCCTTAAAATTATACATCGTGATCTCAAACCCAGTAATGTTTTGTTAGATGATGAAATGAATCCAAAAATTTCAGATTTTGGATTAGCGAAAATGGTTGCTATTAGTGAAAATGAGGGAAAGACAAATAGAATTGCTGGAACATATGGCTATATGTCTCCAGAATATGCAATGTTTGGACAATATTCTGAAAAATCAGATGTTTTTAGTTTTGGAATTATAATTTTAGAAATCATTAGTGGAAGGAAGAATACAAATTATCATGAACAATCAAAAGATGCTTATAGTCTCATAAGCTATGTTTGGAATCATTGGAGGGATGAAAAGTTGCTGGAGATATTGGATCCAAATCTGAAAGAATTTGGATCATATAATGAAGTGATAAAATGCATCCAGATTGGTTTATTATGTGTTCAAAAGAATCCAGACTTAAGGCCTTCCATGGCCAAAGTTGTTCATTATCTTACAAATCATTCTATTCAATTGCCATTTCCACAAGAACCTGCATTTCTTCTTCATGGTCCAATGGAGCCATCCACTACTACTGGATCTGCAAGTAACAAATCATGCTCTATTAATGAAGTCACTATGAGTAAATTCCTTCCTCGCTAG	1200	0.3533	MSSDPRVKGKGKSAPIIVIVVVCIAGMAIIFCFAYYVLKNPMKKSRRAVLRQKYFGSEGTSLEPLEFNLATIESATNKFSEENRLGKGGFGQVYKGILSSGQNIAVKRLSEGSGQGVEEFKNEVLLIARLQHRNLVTLLGFCIEEQEKILVYEYVSNRSLDYFLFGSDRSKVLNWLERCKIIGGVARGILYIHEHSRLKIIHRDLKPSNVLLDDEMNPKISDFGLAKMVAISENEGKTNRIAGTYGYMSPEYAMFGQYSEKSDVFSFGIIILEIISGRKNTNYHEQSKDAYSLISYVWNHWRDEKLLEILDPNLKEFGSYNEVIKCIQIGLLCVQKNPDLRPSMAKVVHYLTNHSIQLPFPQEPAFLLHGPMEPSTTTGSASNKSCSINEVTMSKFLPR	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco03g1219	399	SUPERFAMILY	Protein kinase-like (PK-like)	62	376	IPR011009	-
	Acco03g1219	399	Gene3D	Phosphorylase Kinase; domain 1	42	154	-	-
	Acco03g1219	399	SMART	serkin_6	79	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g1219	399	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	12	395	-	-
	Acco03g1219	399	FunFam	cysteine-rich receptor-like protein kinase 10	155	358	-	-
	Acco03g1219	399	CDD	STKc_IRAK	85	353	-	-
	Acco03g1219	399	Gene3D	Transferase(Phosphotransferase) domain 1	155	358	-	-
	Acco03g1219	399	ProSiteProfiles	Protein kinase domain profile.	79	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g1219	399	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	200	212	IPR008271	GO:0004672\|GO:0006468
	Acco03g1219	399	ProSitePatterns	Protein kinases ATP-binding region signature.	85	107	IPR017441	GO:0005524
	Acco03g1219	399	FunFam	Cysteine-rich receptor-like protein kinase 10	42	154	-	-
	Acco03g1219	399	Pfam	Protein kinase domain	80	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco03g1219	Acco-ChrAcco03	28267423	28270049	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco03g1219	8	399	Receptor kinase-like Gene Family	AT4G21410	50.374	2.61e-136	403

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Acco03g1219		Pkinase	1.7e-48	CL0016