Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1164 ATGATGTCATCCTTAGTCATCAAGCCCCCACCGTCTTCCTCTTCTCTGTGCTACACTCTGTTCGCATTTGGTTCGCCATTTTCGCTTTCGAACAAGACTGATCTCTCTGTATACAGCATCTTTGAGACCTTCTTCGTTTTTGGTTTGGTAAATTTGCTTGAAAATTCCACGATTGATCAATATGAGCTGGGATATATGATGCATGAAACCCTTCAAGTCAAACTTGTCAACAAGGGTTCCAAATTCATGGCCTATGGGCACTACGTATCCCAGGAATGGAAACCCAGCCCTAGTGAGGATGAAAACTCGGCTGATGGTTGTTTCAGTTGCAACATCTGCTTAGACTTTGCTCACGAACCGGTTGTCACTCACTGTGGCCACCTTTACTGTTGGCCCTGCATCTACAAGTGGCTTCATCTCCAAACTGATTCCTTAACATCTGATGAGCACCCTCAATGCCCCGTTTGCAAGGCTTGTATATCTTCTACCACAATTATCCCGCTCTATGGCCGAGGACAGGTGTCACTAGCTCAAAGTGAGCGCCACAATGAGAAGTCATCTGATCCTGATATTTTTATACCGCCAAGACCACCTGCTGCAAGTGTTGAAGCTCCATTATCATTATCATCATCTAATCCTTCTCGTAACCCTAACCAGAATCCTCATTTTGTTGCTTCTCCTCTAGACCATGAGAATGCTTCATCACCACAACAGATGGTTAATCTTGGTGCTAACTTGATGCCGGGTTTTCATCATCCTCTGCATGGGATGTTTGGGGAGATGGTGTATGCTAGAGTGTTTGGTGACCCGGGAAATATATACATGTATCGGAATTCTTATCAAATGGTGGGAGTTAACAGCCCCAGATTGAGAAGGCAGGAGATGCAGGCAGACAAATCATTGAAGAGAGTATCAATTTTCCTGTTTTGCTGCCTTGTTTTGTGTCTTCTTGTGTTTTGA 960 0.4437 MMSSLVIKPPPSSSSLCYTLFAFGSPFSLSNKTDLSVYSIFETFFVFGLVNLLENSTIDQYELGYMMHETLQVKLVNKGSKFMAYGHYVSQEWKPSPSEDENSADGCFSCNICLDFAHEPVVTHCGHLYCWPCIYKWLHLQTDSLTSDEHPQCPVCKACISSTTIIPLYGRGQVSLAQSERHNEKSSDPDIFIPPRPPAASVEAPLSLSSSNPSRNPNQNPHFVASPLDHENASSPQQMVNLGANLMPGFHHPLHGMFGEMVYARVFGDPGNIYMYRNSYQMVGVNSPRLRRQEMQADKSLKRVSIFLFCCLVLCLLVF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1164 319 SMART ring_2 110 156 IPR001841 -
Acco03g1164 319 Pfam Zinc finger, C3HC4 type (RING finger) 110 156 IPR018957 GO:0046872
Acco03g1164 319 ProSitePatterns Zinc finger RING-type signature. 125 134 IPR017907 -
Acco03g1164 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 172 IPR013083 -
Acco03g1164 319 ProSiteProfiles Zinc finger RING-type profile. 110 157 IPR001841 -
Acco03g1164 319 CDD RING-HC_AtRMA-like 108 158 - -
Acco03g1164 319 MobiDBLite consensus disorder prediction 204 231 - -
Acco03g1164 319 SUPERFAMILY RING/U-box 104 169 - -
Acco03g1164 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 90 316 IPR045103 GO:0005783|GO:0006511|GO:0061630
Acco03g1164 319 MobiDBLite consensus disorder prediction 176 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1164 Acco-ChrAcco03 26574926 26579499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1164 96 305 C3H Transcription Factor Family AT4G27470 40.909 1.77e-47 158