Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1163 ATGGCGGGTCGGTTCGGATTTGGTTCCTCCGCTTCGACATCCATGACCGTCACCAACACGCCTTCGCAGGACCTTGCCCTCACCAATCTTGCCTTCTGCACCCCTTCTGATCTTCAGAAGTTCGCTGTCTCTGGTTACAGAAACCTCTTCCTGGCTTTGATTGGCGATTCCTTTAGCATGCGTAATGGCAATATAGCACTTAACTCCATTCAACGTCGGTGTGTCAAAGTTTCTGCTGGTGAATCCATATCTGTGAGCAGATTCATCCCACCAGACAACTTCAACCTTGCGGTGCTAACCCTTGAGCTGGACTTCGTTAAAAGGGGAAATAGAAGTGAACAAATTGATGCTGTTCTCCTGTCCAAGCAACTTAAAAAGAGATTTATAAATCAGGTCATGACAGCTGGGCAGAAAGTATTATTTGAGTTCCATGGAAATAATTATAACTTTACAGTCTGTCAAGCTGTTGTTGAGGGCCAAGAAGAGTCTAATTCTCTTGAAAGAGGGATGATTTCAGATGACACATACATTATTTTTGAAGCAACACGCGACAGCGGAATTAAGATTGTCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTTAATCTTCAGTCACTGGGTATTGGAGGTCTGAGTGCGGAGTTTGCAGATATATTTCGAAGAGCTTTTGCTTCTCGTGTTTTTCCTCCTCATGTGACATCCAAGCTAGGGATCAAGCATGTGAAGGGAATGCTGCTTTATGGGCCTCCTGGTACTGGAAAAACTCTAATGGCGCGTCAGATAGGAAAAATTCTGAATGGAAAGGAACCAAAGATTGTCAATGGCCCTGAAGTCTTGAGTAAATTTGTTGGCGAAACTGAAAAGAATGTGAGGGACCTCTTTGCTGATGCTGAACAAGATCAAAGGACCAAAGGGGATGAAAGTGATTTGCACGTCATCATTTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTAGGGATGGTACTGGAGTTCATGATAGTATTGTGAATCAACTTCTTACTAAGATAGATGGTGTGGAATCACTGAATAATGTTTTGCTTATTGGAATGACCAACAGAAAAGACATGCTTGATGAAGCTCTTTTAAGACCGGGCCGACTAGAAGTACTGATTGAGATAAGCCTTCCTGATGAAAATGGCCGATTGCAGATTCTCCAAATTCACACTAACAAGATGAAAGAGAATTCTTTCCTGGCTCCTGATGTGAATCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTAAAAAGTGCAGTCTCATTTGCTTTAAATAGACAACTAAGCCTCGATGATCTCACCAAGCAAGTTGAAGAAGAGAATATTAAGGTAACGATGGAGGACTTTTTGAATGCACTCCAAGAAGTTATTCCTGCATTCGGAGCTTCCACTGATGACCTTGAAAGATGCAGACTCCATGGCATGGTAGACTGCGGTGATCGGCATAAGCACATTTATCAAAGGGCAATGCTACTAGCAGAGCAAGTGAAAGTGAGTAAAGGAAGCCCACTTATCACTTGTCTTCTTGAGGGTACTAGTGGCAGTGGAAAAACAGCACTTGCAGCTACTGTGGGTATTGATAGCGATTTCCCATATGTGAAAATAGTTTCTGCTGAATCAATGATTGGACTACATGAGAGCACTAAATGTGCACAGATTATCAAGGTGTTCGAGGATGCATACAAGTCACCATTGAGTGTTATCGTTCTTGATGACATTGAGAGGTTGTTGGAGTATATGCCCATTGGTCCAAGGTTTTCAAATTTGATTTCACAGACATTATTGGTCTTGCTTAAACGGCTTCCTCCAAAGGGTAAAAAACTGCTGGTTATTGGTACGACAAGTGAGTTGGTTTTCTTGGAGTCAGTTGGATTTTGTGATACTTTCTCTGTTACTTATCATGTTCCTACGTTGAGCACAAATGATGCGAAGAAGGTGCTACGACAGCTGAATGTTTTTGCTGAGGAAGATATTGATGCTGCGGCAGAGGCCTTGAATGATATGCCTATAAAGAAGCTATACATGTTAATTGAGATGGCTGCCCAAGGAGAGTATGGTGGATCTGCAGAAGCCATATATTCTGGCAAAGAGAAGATTCAGATCTCACACTTCTATGATTGCCTCCAAGATGTTGTTCGTATATAG 2211 0.4215 MAGRFGFGSSASTSMTVTNTPSQDLALTNLAFCTPSDLQKFAVSGYRNLFLALIGDSFSMRNGNIALNSIQRRCVKVSAGESISVSRFIPPDNFNLAVLTLELDFVKRGNRSEQIDAVLLSKQLKKRFINQVMTAGQKVLFEFHGNNYNFTVCQAVVEGQEESNSLERGMISDDTYIIFEATRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTKGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVLIEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKQVEEENIKVTMEDFLNALQEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLAEQVKVSKGSPLITCLLEGTSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEYMPIGPRFSNLISQTLLVLLKRLPPKGKKLLVIGTTSELVFLESVGFCDTFSVTYHVPTLSTNDAKKVLRQLNVFAEEDIDAAAEALNDMPIKKLYMLIEMAAQGEYGGSAEAIYSGKEKIQISHFYDCLQDVVRI 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1163 736 Gene3D - 487 658 IPR027417 -
Acco03g1163 736 Pfam Cell division protein 48 (CDC48), domain 2 114 159 IPR004201 -
Acco03g1163 736 SMART CDC48_N_2 14 90 IPR003338 -
Acco03g1163 736 Gene3D - 198 390 IPR027417 -
Acco03g1163 736 Gene3D - 9 88 - -
Acco03g1163 736 SUPERFAMILY Cdc48 domain 2-like 91 194 IPR029067 -
Acco03g1163 736 Gene3D - 391 478 - -
Acco03g1163 736 FunFam vesicle-fusing ATPase isoform X1 487 658 - -
Acco03g1163 736 PANTHER VESICULAR-FUSION PROTEIN NSF 12 735 IPR039812 GO:0016887|GO:0035494
Acco03g1163 736 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Acco03g1163 736 FunFam Vesicle-fusing ATPase 92 189 - -
Acco03g1163 736 Pfam ATPase family associated with various cellular activities (AAA) 249 389 IPR003959 GO:0005524|GO:0016887
Acco03g1163 736 Pfam ATPase family associated with various cellular activities (AAA) 530 638 IPR003959 GO:0005524|GO:0016887
Acco03g1163 736 SMART AAA_5 525 646 IPR003593 GO:0016887
Acco03g1163 736 SMART AAA_5 245 392 IPR003593 GO:0016887
Acco03g1163 736 Pfam AAA+ lid domain 416 471 IPR041569 -
Acco03g1163 736 Gene3D - 92 189 - -
Acco03g1163 736 CDD AAA 530 637 - -
Acco03g1163 736 FunFam Vesicular-fusion ATPase SEC18 201 391 - -
Acco03g1163 736 SUPERFAMILY ADC-like 11 88 IPR009010 -
Acco03g1163 736 CDD RecA-like_NSF-SEC18_r1-like 212 388 - -
Acco03g1163 736 FunFam Vesicle-fusing ATPase 391 478 - -
Acco03g1163 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 488 IPR027417 -
Acco03g1163 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 700 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1163 Acco-ChrAcco03 26551711 26565814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1163 240 456 Calmodulin-binding Proteins AT3G56690 39.367 5.27e-41 159