Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1141 ATGGGAAGTGCACCATTACCACCAGGTTTTTGTTTTCACCCAACCGACGAAGAACTGGTCGGATATTATCTAAAGAGAAAAGTAGAAGGGCTTGAAATAGAGCTTGAGGTTATCCCATTCATTGACTTGTACAAATTTGATCCATGGGAATTGCCAGGACATAGAAAGACCCTTGTTTTCTATCGCGGAAGAGCTCCACTTGGAGATCGAACTGAGTGGATCATGCATGAGTATCGACTCAACAATGACTCTGATCTCTCATCACGTAGTTTTTAG 276 0.4239 MGSAPLPPGFCFHPTDEELVGYYLKRKVEGLEIELEVIPFIDLYKFDPWELPGHRKTLVFYRGRAPLGDRTEWIMHEYRLNNDSDLSSRSF 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1141 91 SUPERFAMILY NAC domain 3 85 IPR036093 GO:0003677|GO:0006355
Acco03g1141 91 Gene3D NAC domain 15 54 IPR036093 GO:0003677|GO:0006355
Acco03g1141 91 Gene3D NAC domain 55 90 IPR036093 GO:0003677|GO:0006355
Acco03g1141 91 Pfam No apical meristem (NAM) protein 53 80 IPR003441 GO:0003677|GO:0006355
Acco03g1141 91 Pfam No apical meristem (NAM) protein 7 55 IPR003441 GO:0003677|GO:0006355
Acco03g1141 91 ProSiteProfiles NAC domain profile. 6 91 IPR003441 GO:0003677|GO:0006355
Acco03g1141 91 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1141 Acco-ChrAcco03 25896246 25896807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1141 1 90 NAC Transcription Factor Family AT4G17980 46.897 1.55e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco03g1141 NAM 8.6e-13 No_clan