Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco03g1078 | ATGATGTCTACACTTACGGAGGAAGAGAAGCTGCGTTTCGAGTTTCTCTTCGACGATAAGATCCTCACGATTTCTCGAAGCATCGGTGTCAACGGCATCAAAGAGGGATATATTACAATAGCTATATTCATCGACGATGGAGGAGTTGCAGAGAGCAATTCATGGTGTGATAACGCATTTTGTGGAGAGGCATCTTGTGCTGAGAAGACGGAAATGGAAGCCTATGGTGGGTACTCGGTTGATGAGAAAGCTTCTAGGGTCGAGGATGCTTTCCTTGAATTTCTGAAGAGTTTTCGGACCGGCCAGCAGAGAGAGCTCTATTACGAAGCTGAGATTGAAACAATGAGAAACAACGAATCCAACACGATGTTCATTGATTTCTCGCATGTCATTCTTTACAACGATCTTCTTCAGAAAGCCATTTCTGATGAATACTTGAGATTTGAGCCCTATCTGAAGAATGCTTGCAAGAGGTTTGTTTTGGAGTTGAAGCCAACCGTCATATCTGACGATAGCCCTTATAAGGACATAAATATTGCTTTCTTCAACATTCCAATCGTTAAGAGGTTAAGGGAACTTACTACAGCTGAAATTGGAAAACTAGTGTCTGTGACTGGAGTGGTGACAAGGACTAGTGAGGTTCGACCTGAGCTTCTCCAGGGAACTTTCAAGTGCTTAGAATGTGGTGGGGTTGTAAAGAATGTTGAACAGCAATTCAAGTATACCGAGCCAGCGGTCTGTCTGAATGCAACCTGCTTAAAGGCTCCAAGGTGGGCATTGCTGCGGCAAGAGAGCAAATTTACTGACTGGCAGAGAGTCAGAATGCAGGAGTCATCTAAAGAGATTCCTGCTGGCTCTCTTCCTAGGTCATTAGATGTTATTCTACGTCATGAGATTGTTGAACAGGCCAGGGCTGGTGACACGGTGATTTTTACTGGAACTGTTGTTGCCATACCTGATATATTGGCATTGGCATCCCCAGGAGAGAGAGCTGAATGCCGCCGAGAAGCTTCTCAGCGCAAGAATTCTTCAGTTGGAACTGAAGGTGTGCGGGGTCTTAGGGCATTGGGAGTCAGAGACCTATCATATCGACTAGCTTTTATAGCCAACTATGTTCAGATATGTGATGGGAGAAAAGAGACAGACATCAGGAACAGAAAGAAGGATGCGGAAGATGAAGAACAGCAATTTACAACACAGGAGCTTGATGAAGTTAAAAGAATGAGGAACACTCCAGATTTCTTTAACAAACTTGTTGACAGCATAGCACCAACTGTCTTTGGTCACCAAGATATAAAGCGAGCAATCCTTCTTATGCTCTTGGGTGGAGTACACAAATTGACTCATGAAGGCATCAATCTCAGAGGAGACATCAACGTTTGTATTGTTGGGGATCCCAGTTGTGCCAAGTCACAGTTTCTCAAATATACTGCTGGTATAGTTCCGAGATCTGTGTATACATCTGGAAAATCATCTTCGGCTGCTGGCTTGACTGCAACAGTTGCCAAGGAACCTGAAACTGGGGAGTTTTGCATTGAGGCTGGTGCTTTAATGCTTGCTGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGACGTCAGGGATCAGGTTGCAATTCATGAGGCCATGGAGCAGCAGACAATTAGCATCACAAAGGCAGGAATACAAGCCACACTTAATGCACGTACCTCCATTCTTGCGGCCGCCAACCCTACTGGGGGACGCTATGACAAGTCTAAACCGCTCAAGTATAACGTCGCCCTTCCACCAGCTATTTTATCAAGGTTCGATCTAGTATACGTTATGATTGATGACCCAGATGATCAGACAGATTACCACATAGCCCATCACATTGTGATAGTTCATCAAAAGCGTGAAGATGCTCTTACTCCATCATTCAGTACAGCGGAAATTAAGCGATATATAGCTTATGCAAAAACTCTCAAACCAAAGCTCAATCCAGATGCCAGAAAACTATTAGTAGACTCTTATGTTGCCCTTCGGAGAGGAGATATGAACCCTGGTAGTAGGGTTGCATATCGTATGACTGTTAGGCAGTTAGAGGCATTAATCAGGCTGTCCGAGGCCATTGCACGATGTCATTTAGAAACTCAGGTGCAACCTCGTCATGTTCGTCTAGCAGTAAGATTGCTGAATACATCAATAATAAGTGTGGAGTCCAGTGAAATTGATCTGTCTGAATTTCAAGAAGAAAACCGAGATGACAGCATGGGTGGCGGTGATGGACCTGATAGTAGAAATGGTGACGATGATCAAGGGGGAAGCGCTACAGAACCAAAAGCTGATGGAACTAAAGAGGGTGCAGCAGATGGTTCTACCCCTCAACAAGGGAAGAAACTTATCATAAGCGATGAATATTTCCAGAGAGTTACCCAGGCCCTTGTTATGCGCCTTAGACAGCATGAAGAAACAGTCGCACAAGAAGGAAATGGTTTGGCTGGAATGAGGCAACGTGATTTGATCCAATGGTATGTGAACCAGCAAAATGAGAAAAATAATTACAGTTCAATGGAAGAAGCATCTGCGGAAGTTACCAAAATTAAAGCTATTATAGAGAGCTTGATTAGAAGGGAAGGCCATTTGATAGTGTTAGACGATGGTAGGGAAGCAGCATCCGAGGCCGCAGGTGCCGAGCAGGGGGCATCAATATCCAGAAATGATCGAATCCTGGCTGTGGCTCCAAACTATGTTGTGGATTGA | 2727 | 0.4433 | MMSTLTEEEKLRFEFLFDDKILTISRSIGVNGIKEGYITIAIFIDDGGVAESNSWCDNAFCGEASCAEKTEMEAYGGYSVDEKASRVEDAFLEFLKSFRTGQQRELYYEAEIETMRNNESNTMFIDFSHVILYNDLLQKAISDEYLRFEPYLKNACKRFVLELKPTVISDDSPYKDINIAFFNIPIVKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGGVVKNVEQQFKYTEPAVCLNATCLKAPRWALLRQESKFTDWQRVRMQESSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVAIPDILALASPGERAECRREASQRKNSSVGTEGVRGLRALGVRDLSYRLAFIANYVQICDGRKETDIRNRKKDAEDEEQQFTTQELDEVKRMRNTPDFFNKLVDSIAPTVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDVRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVIVHQKREDALTPSFSTAEIKRYIAYAKTLKPKLNPDARKLLVDSYVALRRGDMNPGSRVAYRMTVRQLEALIRLSEAIARCHLETQVQPRHVRLAVRLLNTSIISVESSEIDLSEFQEENRDDSMGGGDGPDSRNGDDDQGGSATEPKADGTKEGAADGSTPQQGKKLIISDEYFQRVTQALVMRLRQHEETVAQEGNGLAGMRQRDLIQWYVNQQNEKNNYSSMEEASAEVTKIKAIIESLIRREGHLIVLDDGREAASEAAGAEQGASISRNDRILAVAPNYVVD | 908 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco03g1078 | 908 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 424 | 724 | IPR027417 | - | |
| Acco03g1078 | 908 | MobiDBLite | consensus disorder prediction | 735 | 765 | - | - | |
| Acco03g1078 | 908 | Gene3D | - | 217 | 268 | - | - | |
| Acco03g1078 | 908 | Pfam | MCM N-terminal domain | 89 | 183 | IPR027925 | - | |
| Acco03g1078 | 908 | Gene3D | - | 80 | 186 | - | - | |
| Acco03g1078 | 908 | FunFam | DNA helicase | 217 | 268 | - | - | |
| Acco03g1078 | 908 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 81 | 847 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g1078 | 908 | ProSiteProfiles | MCM family domain profile. | 414 | 620 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g1078 | 908 | Pfam | MCM6 C-terminal winged-helix domain | 787 | 907 | IPR041024 | - | |
| Acco03g1078 | 908 | Pfam | MCM P-loop domain | 402 | 624 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g1078 | 908 | Coils | Coil | 846 | 866 | - | - | |
| Acco03g1078 | 908 | Pfam | MCM AAA-lid domain | 640 | 724 | IPR041562 | - | |
| Acco03g1078 | 908 | FunFam | DNA helicase | 399 | 729 | - | - | |
| Acco03g1078 | 908 | Gene3D | - | 785 | 908 | - | - | |
| Acco03g1078 | 908 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 594 | 602 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g1078 | 908 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 455 | 470 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g1078 | 908 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 543 | 556 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g1078 | 908 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 515 | 529 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g1078 | 908 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 567 | 579 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g1078 | 908 | CDD | MCM6 | 417 | 723 | - | - | |
| Acco03g1078 | 908 | Gene3D | - | 190 | 318 | IPR012340 | - | |
| Acco03g1078 | 908 | SMART | mcm | 186 | 725 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Acco03g1078 | 908 | ProSitePatterns | MCM family signature. | 523 | 531 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Acco03g1078 | 908 | MobiDBLite | consensus disorder prediction | 735 | 786 | - | - | |
| Acco03g1078 | 908 | Pfam | MCM OB domain | 190 | 318 | IPR033762 | - | |
| Acco03g1078 | 908 | Gene3D | - | 395 | 742 | IPR027417 | - | |
| Acco03g1078 | 908 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 145 | 157 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Acco03g1078 | 908 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 349 | 370 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Acco03g1078 | 908 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 187 | 199 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Acco03g1078 | 908 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 237 | 254 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Acco03g1078 | 908 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 290 | 301 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Acco03g1078 | 908 | SUPERFAMILY | Nucleic acid-binding proteins | 91 | 320 | IPR012340 | - | |
| Acco03g1078 | 908 | FunFam | DNA helicase | 784 | 908 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco03g1078 | Acco-ChrAcco03 | 24500676 | 24507423 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco03g1078 | 72 | 908 | Core DNA Replication Machinery Family | AT5G44635 | 72.370 | 0.0 | 1288 |