Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1076 ATGAAGACACCAAGCCCCGAACCTCGAAATTTCTTCACAACGCAATCATTTCGCTACAGAAGAAAACTCTGCAAACAAAACCGCAAGATGCAAATCTTCGTCAAGACCCTTACAGGCAAGACCATCACTCTCGAAGTCGAGAGCTCAGATACCATTGACAATGTCAAGACAAAGATTCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCGACTGATTTTTGCGGGTAAGCAGCTTGAGGACGGACGCAGTCTTGCCGACTATAACATCCAAAAGGAATCGACGCTCCACCTCGTGCTCCGTTTACGTGGTGGTATGCAGATTTTTGTCAAAACGCTCACAGGCAAGACCATCACCCTGGAGGTAGAGAGCTCCGACACCATTGATAACGTCAAGACAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAGCAAAGGCTTATCTTCGCTGGTAAACAGCTTGAGGATGGCCGTACCTTGGCTGACTATAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGTCTCCGTGGTGGTATGCAGATTTTTGTCAAAACTCTCACAGGTAAGACCATCACCCTGGAGGTAGAGAGCTCCGACACAATTGACAATGTTAAGGCTAAAATTCAAGATAAGGAAGGAATCCCTCCTGACCAGCAGAGGTTGATTTTCGCTGGAAAGCAGCTGGAAGATGGACGCACATTGGCTGATTATAACATTCAAAAGGAGTCCACCCTCCACCTTGTTCTGCGTCTCCGTGGTGGTATGCAGATTTTTGTGAAGACCCTCACTGGCAAGACTATTACGTTGGAGGTTGAGAGCTCTGACACAATTGACAATGTGAAGGCAAAAATCCAAGATAAGGAAGGAATCCCTCCTGACCAGCAGAGGTTGATTTTCGCTGGGAAGCAGCTGGAAGATGGACGCACATTGGCTGATTATAACATTCAAAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTAAGAGGAGGTATGCAGATCTTTGTGAAGACCTTGACAGGCAAAACCATCACCCTTGAGGTTGAGAGTTCAGATACGATTGACAATGTGAAGGCAAAAATCCAGGACAAGGAAGGAATCCCTCCGGACCAGCAAAGATTGATCTTTGCGGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGACTACAACATTCAGAAGGAGTCCACCCTTCATCTTGTTCTGCGTCTTCGTGGAGGATTCTGA 1233 0.4793 MKTPSPEPRNFFTTQSFRYRRKLCKQNRKMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRSLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1076 410 ProSitePatterns Ubiquitin domain signature. 56 81 IPR019954 -
Acco03g1076 410 FunFam Polyubiquitin 3 106 181 - -
Acco03g1076 410 SUPERFAMILY Ubiquitin-like 180 257 IPR029071 -
Acco03g1076 410 CDD Ubl_ubiquitin 334 409 - -
Acco03g1076 410 ProSitePatterns Ubiquitin domain signature. 284 309 IPR019954 -
Acco03g1076 410 FunFam Polyubiquitin 3 334 409 - -
Acco03g1076 410 PANTHER UBIQUITIN 182 259 - -
Acco03g1076 410 SUPERFAMILY Ubiquitin-like 104 181 IPR029071 -
Acco03g1076 410 SUPERFAMILY Ubiquitin-like 333 409 IPR029071 -
Acco03g1076 410 CDD Ubl_ubiquitin 182 257 - -
Acco03g1076 410 FunFam Polyubiquitin 3 258 333 - -
Acco03g1076 410 SUPERFAMILY Ubiquitin-like 257 333 IPR029071 -
Acco03g1076 410 PRINTS Ubiquitin signature 213 233 IPR019956 -
Acco03g1076 410 PRINTS Ubiquitin signature 234 255 IPR019956 -
Acco03g1076 410 PRINTS Ubiquitin signature 192 212 IPR019956 -
Acco03g1076 410 ProSitePatterns Ubiquitin domain signature. 132 157 IPR019954 -
Acco03g1076 410 CDD Ubl_ubiquitin 30 105 - -
Acco03g1076 410 FunFam Polyubiquitin 3 182 257 - -
Acco03g1076 410 ProSiteProfiles Ubiquitin domain profile. 106 181 IPR000626 GO:0005515
Acco03g1076 410 ProSiteProfiles Ubiquitin domain profile. 182 257 IPR000626 GO:0005515
Acco03g1076 410 ProSiteProfiles Ubiquitin domain profile. 334 409 IPR000626 GO:0005515
Acco03g1076 410 ProSiteProfiles Ubiquitin domain profile. 258 333 IPR000626 GO:0005515
Acco03g1076 410 ProSitePatterns Ubiquitin domain signature. 360 385 IPR019954 -
Acco03g1076 410 SUPERFAMILY Ubiquitin-like 25 105 IPR029071 -
Acco03g1076 410 ProSitePatterns Ubiquitin domain signature. 208 233 IPR019954 -
Acco03g1076 410 FunFam Polyubiquitin 3 30 105 - -
Acco03g1076 410 CDD Ubl_ubiquitin 258 333 - -
Acco03g1076 410 Pfam Ubiquitin family 184 255 IPR000626 GO:0005515
Acco03g1076 410 Pfam Ubiquitin family 336 407 IPR000626 GO:0005515
Acco03g1076 410 Pfam Ubiquitin family 108 179 IPR000626 GO:0005515
Acco03g1076 410 Pfam Ubiquitin family 32 103 IPR000626 GO:0005515
Acco03g1076 410 Pfam Ubiquitin family 260 331 IPR000626 GO:0005515
Acco03g1076 410 Gene3D - 22 105 - -
Acco03g1076 410 Gene3D - 258 333 - -
Acco03g1076 410 Gene3D - 182 257 - -
Acco03g1076 410 Gene3D - 334 410 - -
Acco03g1076 410 Gene3D - 106 181 - -
Acco03g1076 410 ProSiteProfiles Ubiquitin domain profile. 30 105 IPR000626 GO:0005515
Acco03g1076 410 SMART ubq_7 106 177 IPR000626 GO:0005515
Acco03g1076 410 SMART ubq_7 182 253 IPR000626 GO:0005515
Acco03g1076 410 SMART ubq_7 30 101 IPR000626 GO:0005515
Acco03g1076 410 SMART ubq_7 258 329 IPR000626 GO:0005515
Acco03g1076 410 SMART ubq_7 334 405 IPR000626 GO:0005515
Acco03g1076 410 CDD Ubl_ubiquitin 106 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1076 Acco-ChrAcco03 24468439 24471238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1076 334 410 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.37e-47 156