Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1040 ATGTATAGAAGATCTCATGTAGCGAGTATTTGGGATATGCCTGGACTGGGTGGCATTGTGTTCTGCTCTGAGTTGGTCTTGGTGGTGGCAGCTGTGTTTCGCAAATCTTTAAAACTTACTCATGAAGCCCGAAAGCAATTTGCATCTGGGAAAATAACCAATTTGATGACTACTGATGCTGAGGCACTTCAGCAAATATGTCAGTCACTTCATACTTTGTGGTCAGCTCCATTTCGTATCATTGTTGCCCTGGTTCTTCTATACCAACAACTAGGTGTTGCTTCTCTTCTTGGGGCTTTATTGCTGGTTCTATTGTTCCCTATACAGACTTTTATCATTAGTAGAATGCAAAAGTGGTCCAAGGAAGGGTTGCAGCGTACAGACAAGAGAATTGGTCTGATGAATGAAATTTTGGCTGCTATGGACACTGTAAAATGTTATGCGTGGGAGAGTAGTTTCCAATCTAAAGTACAAGTTGTCCGAGATGATGAATTATCATGGTTCCGGAAGGCATCATTACTTGGAGCGTGTAATGGATTTATACTAAATAGCATTCCAGTTTTTGTTACTGTTCTTTCATTTGGAGTATTCACCTTGCTTGGAGGGGATCTAACACCTTCGAGAGCATTTACATCCCTTTCTTTGTTCGCTGTGTTACGGTTTCCCCTCTTCATGCTTCCTAATATTATTACTCAGGTTGTTAATGCAAATGTATCCTTGAAGCGTCTAGAAGAGTTGCTCTTGGCAGAAGAACGGGTTCTTATGCCTAATCCACCTCTAGAGCCAGGATTACCAGCAATCACAGTGAAGAATGGAAACTTTTCATGGGATGCAAAGGCTGGGAGGCCTACATTGTCTAATGTCAATTTGGATGCACCTGCTGGTAGCCTTGTTGCAATTGTGGGCAGTACTGGAGAAGGAAAGACATCACTCATATCTGCAATGCTTGGGGAGCTTCCTCCTACTGCAGATGCAACTGTTGTTATAAGAGGGACAGTTGCTTATGTACCACAAATTTCGTGGATCTTTAACGCAACTGTGCGGGATAACATTTTATTTGGCTCTCGCTTTGACCCTGTGAGATATGAGAGGGCAATAGATGTGAGTGAACTGCAGCATGACCTCGAGTTGCTTCCTGGTGGTGACCTTACTGAAATTGGTGAAAGAGGGGTAAATATTAGTGGTGGTCAAAAACAAAGGGTATCCATGGCTAGAGCTGTCTACTCCAATTCAGATGTGTACATATTTGATGACCCTTTAAGTGCTCTGGATGCACATGTTGGAAGACAGGTGTTTGATAAATGCATCAAAGGTGAATTGAGAGGAAAAACCCGAGTCCTTGTTACAAATCAGCTACATTTCCTTTCACAAGTCGATAGAATTATGCTGGTCCATGATGGTATGGTAAAAGAAGAGGGAACATTTGAGGAACTCTCTAACCATGGACCGCTGTTCCAAAAGCTTATGGAAAATGCGGGAAAGATGGAGGAGTATGCAGAAGAAAACAGAGACACTGAAAGTAATGATCAAAAGACCTCTTCAAAATCAGTTCCCAATGGACAACCTAATGATATGGCAAAAATTGAAAATAAACCAAAAGAAGCCAAATCTGTCCTTATTAAGCAAGAAGAACGAGAAACAGGTGTTGTCAGTCTGAAAGTTCTACAGAGGTACAAGAATGCATTAGGAGGATTTTGGGTGGTGCTAGTGCTTTTTACATGCTATATCTTAACAGAAGTGTTGCGAGTTTCTAGTAGCACATGGTTAAGCCATTGGACTGATCAGAGTGCGTCAAAGGGTTATAATTCTGGTTACTACAATCTGATATATGCAGCCCTGTCATTTTGTCAGGTTTTGGTGACTTTGACAAATTCTTTCTGGCTAATTATATCAAGTCTTTATGCTGCTAAAAGATTGCATGACGCTATGCTCCACTCAATTTTAAGGGCTCCTATGTCATTTTTTCATACCAATCCTCTTGGAAGGATCATCAATAGGTTTGCAAAGGATCTCGGTGATATAGACCGTAATGTTGCTCCGTTTGTGAATATGTTTTTGGGCCAGGTTTCCCAGCTTCTTTCAACATTCATCTTGATAGGGATTGTGAGCACAATGTCCTTGTGGGCAATAATGCCATTATTGGTGGTGTTTTATGGAGCCTATCTATATTATCAGAGCATGGCCCGTGAAGTGAAGCGCTTAGATTCTATAAGTAGATCTCCTGTATATGCTCAATTTGGAGAAGCACTTAATGGTCTACCAACTATCCGAGCTTACAAAGCTTATGATAGAATGGCTGACATTAATGGAAAAGCCATGGACAATAATATACGATTCACTCTCGTGAACATGAGTGGCAACCGATGGCTTGCAATTCGTCTGGAAACTTTGGGTGGCATTATGATATGGTTTACTGCATCTTTTGCTGTATTGCAAAATGGGAGGGCTGAGAACCAGCAGGCATTTGCATCCACGATGGGGCTTCTACTTAGTTATGCTTTAAATATTACTAGTCTGCTCACAGGGGTACTCAGACTTGCAAGTCTGGCTGAGAATAGTTTAAACGCTGTTGAGCGTGTGGGTACTTATGTTGATTTGCCTTCGGAGGCTCCATCTATCATTGAGAGTAACCGTCCTCCTCCTGGGTGGCCATCATCTGGATCAATCAGATTTGAAGATGCTGTTCTCCGCTATAGACCTGAACTTCCACCTGTCTTACATGGGCTGTCTTTCACAATTTTTCCAAGTGACAAGGTTGGCGTTGTTGGTAGGACAGGAGCAGGAAAAAGTAGCATGTTTAATGCTTTATTTCGACTTGTAGAGCTAGAAAGAGGAAAAATCTTAATCGATGACTGTGACATTGCTAAGTTTGGACTGACTGATTTACGTAAAGTTCTTGGAATTATCCCACAGTCACCTGTTCTCTTTTCAGGAACTGTGAGATTTAATCTTGATCCTTTTAATGAGCACAATGATGCTGACCTTTGGGAGGCTCTGGAGAGAGCACATTTGAAGGATGTGATTCGAAGGAGTTCATTGGGACTGGAAGCAGAGGTATCTGAGGGAGGAGAGAATTTCAGCGTTGGGCAGAGGCAACTATTGAGTCTTGCTCGTGCATTATTACGGAGATCAAAGATATTGGTACTTGATGAGGCAACTGCAGCGGTTGATGTCAGAACTGATGCACTAATACAGAAAACAATTCGAGAAGAGTTTAAATCCTGTACTATGTTAATTATAGCTCATAGACTAAATACCATTATTGACTGTGATCGGATCCTTCTGCTTGATGGTGGTCGGATTCGTGAATATGGGACCCCTGAGGAGCTACTGTCAAACGACGGTAGTGCTTTCTCAAAGATGGTGCAAAGTACTGGAGCTGCAAATGCTCAATATCTACGCAGCTTAGTGCTCAATGGGGATAGTGGAAACAAGCCGGTGGAAGAGGGGAATCATCTCGATGGACAGCGGAAATGGTTAGCTTCATCTCGCTGGAAAGCTGCAGCGCAATTTGCCCTTGCTGTCAGCATGACCTCATCACAGAATGATCTTCGCCAACTGGAAATTGAAGATGACAACAGTATTCTGAAGACGGCCAAGGATGCCGTGATAACACTGCAGGGGATTTTGGATGGAAGGCACGATAAAGAAATTGAGGAATCCTTAGACCAACACCAGATATCACCAAACAGATGGTGGCCATCCTTTTTCAAGATGATTGAGGGTCTGGCTATGTTGAGCAGATTGGCCCGAAACAGGTTCCATGAATCTGACTACAATTTTGAAGACACCTCAATAGATTTCGACCATGTTGATATGTAA 3822 0.4231 MYRRSHVASIWDMPGLGGIVFCSELVLVVAAVFRKSLKLTHEARKQFASGKITNLMTTDAEALQQICQSLHTLWSAPFRIIVALVLLYQQLGVASLLGALLLVLLFPIQTFIISRMQKWSKEGLQRTDKRIGLMNEILAAMDTVKCYAWESSFQSKVQVVRDDELSWFRKASLLGACNGFILNSIPVFVTVLSFGVFTLLGGDLTPSRAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEELLLAEERVLMPNPPLEPGLPAITVKNGNFSWDAKAGRPTLSNVNLDAPAGSLVAIVGSTGEGKTSLISAMLGELPPTADATVVIRGTVAYVPQISWIFNATVRDNILFGSRFDPVRYERAIDVSELQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIMLVHDGMVKEEGTFEELSNHGPLFQKLMENAGKMEEYAEENRDTESNDQKTSSKSVPNGQPNDMAKIENKPKEAKSVLIKQEERETGVVSLKVLQRYKNALGGFWVVLVLFTCYILTEVLRVSSSTWLSHWTDQSASKGYNSGYYNLIYAALSFCQVLVTLTNSFWLIISSLYAAKRLHDAMLHSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAIMPLLVVFYGAYLYYQSMAREVKRLDSISRSPVYAQFGEALNGLPTIRAYKAYDRMADINGKAMDNNIRFTLVNMSGNRWLAIRLETLGGIMIWFTASFAVLQNGRAENQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGTYVDLPSEAPSIIESNRPPPGWPSSGSIRFEDAVLRYRPELPPVLHGLSFTIFPSDKVGVVGRTGAGKSSMFNALFRLVELERGKILIDDCDIAKFGLTDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRSSLGLEAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGRIREYGTPEELLSNDGSAFSKMVQSTGAANAQYLRSLVLNGDSGNKPVEEGNHLDGQRKWLASSRWKAAAQFALAVSMTSSQNDLRQLEIEDDNSILKTAKDAVITLQGILDGRHDKEIEESLDQHQISPNRWWPSFFKMIEGLAMLSRLARNRFHESDYNFEDTSIDFDHVDM 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1040 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 31 235 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco03g1040 1273 Pfam ABC transporter 906 1054 IPR003439 GO:0005524
Acco03g1040 1273 Gene3D - 872 1125 IPR027417 -
Acco03g1040 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 569 852 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco03g1040 1273 CDD ABCC_MRP_domain2 887 1107 - -
Acco03g1040 1273 ProSitePatterns ABC transporters family signature. 393 407 IPR017871 GO:0005524|GO:0016887
Acco03g1040 1273 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 27 1129 - -
Acco03g1040 1273 Gene3D ABC transporter type 1, transmembrane domain 530 870 IPR036640 GO:0005524|GO:0016020
Acco03g1040 1273 Gene3D ABC transporter type 1, transmembrane domain 26 252 IPR036640 GO:0005524|GO:0016020
Acco03g1040 1273 SMART AAA_5 915 1108 IPR003593 GO:0016887
Acco03g1040 1273 SMART AAA_5 294 485 IPR003593 GO:0016887
Acco03g1040 1273 SUPERFAMILY ABC transporter transmembrane region 30 247 IPR036640 GO:0005524|GO:0016020
Acco03g1040 1273 ProSitePatterns ABC transporters family signature. 1026 1040 IPR017871 GO:0005524|GO:0016887
Acco03g1040 1273 SUPERFAMILY ABC transporter transmembrane region 565 869 IPR036640 GO:0005524|GO:0016020
Acco03g1040 1273 FunFam ABC transporter C family member 2 24 252 - -
Acco03g1040 1273 Gene3D - 262 517 IPR027417 -
Acco03g1040 1273 FunFam Multidrug resistance-associated protein member 4 873 1125 - -
Acco03g1040 1273 Pfam ABC transporter 285 420 IPR003439 GO:0005524
Acco03g1040 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 269 491 IPR003439 GO:0005524
Acco03g1040 1273 FunFam ABC transporter C family member 2 261 507 - -
Acco03g1040 1273 FunFam ABC transporter C family member 2 532 870 - -
Acco03g1040 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 490 IPR027417 -
Acco03g1040 1273 Pfam ABC transporter transmembrane region 569 827 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco03g1040 1273 Pfam ABC transporter transmembrane region 31 223 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco03g1040 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 879 1116 IPR027417 -
Acco03g1040 1273 CDD ABC_6TM_ABCC_D2 568 864 IPR044726 GO:0140359
Acco03g1040 1273 CDD ABC_6TM_ABCC_D1 28 242 IPR044746 GO:0140359
Acco03g1040 1273 CDD ABCC_MRP_domain1 267 467 - -
Acco03g1040 1273 MobiDBLite consensus disorder prediction 497 528 - -
Acco03g1040 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 889 1123 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1040 Acco-ChrAcco03 23052951 23087239 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1040 267 693 Calmodulin-binding Proteins AT2G36910 25.053 5.31e-31 130