Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1021 ATGGTTTCAGAAGAAAATGAGATCAAGGACAAACCTTCTACAACTCCCCAGAAAGATATGAAAGATGATGAAATGGTTGATGCTACTTCAACAGGGGAACTTAGAAAGGAAGTTCGTAAAACAGTGTTTACTCTGGAAAAACAAAATGCCACGTCAAAAAAAATATTTGTTGGGAACTTATCGTATGACGTGAAAAGGGCCAATTTGGAAAATTTATTTAAGCATTGTGGAGAAATTGTTGATGTCTCTTTTGGTTTATATCGTGATGGGACATTTAGAGGTTTTGCTCATGTTGAGTTTGCCACTGAAGAAGCTGCACACAATGCCCTTATGTTGAATGGGATTGAGCTATTAAGACGCTCTGCCAGAATTGAGATAGCCCATGAAAAGTTTGGATATACCCCTAATAGCAGTTGTATGAATTGGAACGACTCATTGAAGGGTTTTCAAGCATCCATTGGAGAAGACAAGCCTACAATGTCAGCTACATCAAAAGAAGAAAATGCTAAATCGAGGTTGCTTTTTGTTGGAAACTTGTCATATAGTGTGGAAAAGGATGATTTGGAAAATTTATTTCAAGATTGTGGAGAGATTCTTGATATTCGTTTTGCCACAGATTGTGAAGGGAGGTTTAAAGGCTTCGCACATGTTTTGTTTGCCACAGAAGAAGCGGCAAAAACTGCCCTTATGTTGAACGGGAAGGAACTGTTGAGGCGTTCTCTTAGGCTTAATCTAGCTCTTGAAAGGGGTGCATATTCTCGCAGTAGCAACAACAGGAATGAGTTATTTCAAGATGATATATCATTAGGAGGAAATGAGGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCCGCATCAAAGACAGTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTTTTGATATCCGCTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCCAGAAGCAGCACAAAATGCCCTTATGTTGAATGGAAACGAACTGTTAAGACAATATATAAAGCTTGATTTGGCAAATGAAAAGATTGTGCATTCTTCCAAAAGCAGTATTGGTGGGAGTAGAAACGACTCTGGAAATGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCCTTAAGAGAGGATGAGATTAGATCTAACCTGGAAGAGCATTTCAAATCTTGTGGAATAATTTCCAGGATATCAATTGCAAGAGATTATGGCACTGGTTCTACTAAGGGGTATGCTTGGATAGACTTCATGGATGTTGGTGGCTTCAATAAAGCACTAGAACTAGATGGAACTGAGGTTGTAGGTTGTGTATTGTCAGTGGAGAAAAGAAGACCTCGGCGCTATATTCAAGATGGTAGAGGTGGTGGTAATCTATTAGGTGGATGGCATGGTGGTGATCAATTAGGTGGTGGATGGCGTGGTGGTGGTCAGTTAGGCGGATGGCATGGTGGTGACGAATTAGGTGGTGGATGGTGTGGTGGTGATCAGTATGGTGGATGGCATGGAGGTGGCCAATGGGATCATGGAAGAGAAGGCCCAGATAGTAGAAGTGGACCTGCTCCTACATTTGACTCTTGA 1647 0.405 MVSEENEIKDKPSTTPQKDMKDDEMVDATSTGELRKEVRKTVFTLEKQNATSKKIFVGNLSYDVKRANLENLFKHCGEIVDVSFGLYRDGTFRGFAHVEFATEEAAHNALMLNGIELLRRSARIEIAHEKFGYTPNSSCMNWNDSLKGFQASIGEDKPTMSATSKEENAKSRLLFVGNLSYSVEKDDLENLFQDCGEILDIRFATDCEGRFKGFAHVLFATEEAAKTALMLNGKELLRRSLRLNLALERGAYSRSSNNRNELFQDDISLGGNEAKMPAAPKEQNAASKTVFVGNLSYSVERADLENLFKDCGEIFDIRLATDREGRFKGFGHVEFATPEAAQNALMLNGNELLRQYIKLDLANEKIVHSSKSSIGGSRNDSGNVESQTVFVRGFDTSLREDEIRSNLEEHFKSCGIISRISIARDYGTGSTKGYAWIDFMDVGGFNKALELDGTEVVGCVLSVEKRRPRRYIQDGRGGGNLLGGWHGGDQLGGGWRGGGQLGGWHGGDELGGGWCGGDQYGGWHGGGQWDHGREGPDSRSGPAPTFDS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1021 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 387 468 IPR000504 GO:0003723
Acco03g1021 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 364 IPR000504 GO:0003723
Acco03g1021 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 129 IPR000504 GO:0003723
Acco03g1021 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Acco03g1021 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 389 461 IPR000504 GO:0003723
Acco03g1021 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 357 IPR000504 GO:0003723
Acco03g1021 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 120 IPR000504 GO:0003723
Acco03g1021 548 Gene3D - 371 540 IPR012677 -
Acco03g1021 548 Gene3D - 143 245 IPR012677 -
Acco03g1021 548 SMART rrm1_1 388 464 IPR000504 GO:0003723
Acco03g1021 548 SMART rrm1_1 289 360 IPR000504 GO:0003723
Acco03g1021 548 SMART rrm1_1 173 244 IPR000504 GO:0003723
Acco03g1021 548 SMART rrm1_1 54 125 IPR000504 GO:0003723
Acco03g1021 548 SUPERFAMILY RNA-binding domain, RBD 165 259 IPR035979 GO:0003676
Acco03g1021 548 SUPERFAMILY RNA-binding domain, RBD 280 382 IPR035979 GO:0003676
Acco03g1021 548 SUPERFAMILY RNA-binding domain, RBD 382 490 IPR035979 GO:0003676
Acco03g1021 548 MobiDBLite consensus disorder prediction 1 31 - -
Acco03g1021 548 MobiDBLite consensus disorder prediction 525 548 - -
Acco03g1021 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 248 IPR000504 GO:0003723
Acco03g1021 548 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 159 247 - -
Acco03g1021 548 Gene3D - 2 132 IPR012677 -
Acco03g1021 548 Gene3D - 248 370 IPR012677 -
Acco03g1021 548 SUPERFAMILY RNA-binding domain, RBD 46 134 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1021 Acco-ChrAcco03 22493861 22525428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1021 174 439 Eukaryotic Initiation Factors Gene Family AT2G36660 23.162 3.39e-10 60.8