Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g1017 ATGGTGGAGGAGGAGGGAGTTTTGCCGGACCACCTGCGCTGTAGCCGCACCGACGGCCGGCAATGGCGATGCCGCCGGAGAGTCATGGATAATCTAAAGCTATGTGAGATTCACTATCTACAAGGTCGTCATCGGCAATACAAGGAGAAGGTCCCGGAGTCGCTGAAGCTTCAGAGGAAGCGAAAGAATGGGAGTAAGAACAGCAAGAACGACTCTTTTGTTCTCGACAATGTTGAAATTAGGGCTCTGAACATAGGGAAGAAGGCGAAGCTGATAAAGAAGAGGCCTAAATTCTCGGATTCTTCTGAAGCAGTGGATGCTCATCCTGTGAAGAAAAAGGCCTTGAAACAAGACGGTATGCAGTTGGAGTTGATAAGGATTGTTCTGAAGAGGGAGATTGAGAAGAAGAAGAAGCAAGGAGAGAACAAGAAGGAGGAGGAGGAAGAAGAAGGAGAAGAGCTAATTCATAACAGCGAGGGAGAGTTGACCAAAGAATTACCCAATGGTGTTATGGCAATCTCTTCAGCTTCAACGCCCCAACATTACGCCAATGTTGGTTCATATTGCAATGTTAAAGTGGGGATTGAACATAAATCAATCTCCCCTCGTTACTTCAGGTCCAAGAATGTGGAGAAGCTTCCCGCTGGCAAGTTGCAGGTATTACCTTTAGGGCGAAACTTGAAGAAGTGTAGGAGGAAAAAGTGTCACTGGTGCCAGAAAAGCGATTCTTGGAATCTCATTAAATGTTCAAGCTGTCAAAAAGAATTCTTTTGCATGGATTGCATCAAAGAACGGTACTTTGAAACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTCGAGGAACATGCTCCTGTAAAGACTGCTTGGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGGCGAGTAAAGGCAGAGTTGACAGAATCTTGTGTTTCCACTATATGGTCTGCATGCTTCTTCCTCTACTAAAACAAATCAGTGAAGACCATAATATTGAAGTAGCAAAATTGAAAAGTAAAGAGAAAAGAACCTCTGATATTCAAATCAAGCAAGTTGAATTTTGCTGTTATGAACAAAATTGCTGGATACCCAATAAATTGAAAGATGGCATTGCCAGTGAAAATCACCTTTTGGATGTCATTTCCAATGGCAATTCGACTGCTACTTCATCACCAGACCGCACAATTTGTAATGGTTCTGGCGATTTATCTTGTACCCCCACTGAGCTTGGTGGTTATGGTGATTGCCTCCATGACTTGAGATGTGTCTTTCCCATAAGTTTGATCAAAGAAATGGAAACAAAAGCTGAAGAAATATCTTGCTGCTATGACTTTCCTGAATCATTGGATATAAGTTCAAGCTGTTCGCTTTGTCTCAATTCTGATAATAAGATCGGTAGATGCAAACAGTGGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATCGCTTGTTTTATCCCACAGTTTTGGACATCAGTCGTGATAATTTTGAACATTTTCAGAAGCACTGGAGAAAAGGCCATCCAATAGTAGTGCGAGATGTTCTCCAAAGTAATTCAAACCACAGCTGGGACCCACTGGTCATGTTCTGCTCTTATGTTGAGCAGAGTATCACAAGATATCAGAATGATAAAGACTTACTTGAAACTTGTTTGGATTGGTGTGAGGTAGAAATTAACATTAAGCACTATTTTTCTGGGTCTCTAAGATGTCAACCACAGAAAAATACTTGGCGTGAGATGCTGAAACTGAAGGGTTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAACTCATTTTGCTCAAGTGATGGCTGCCCTACCACTTCCAGAATACATGAATCCCATGTCTGGTATTCTGAATTTAGCAGCAAATTTGCCACAAGGGAGTGCCAAACATGACATAGGCCCGTTTGTCTATATGTCATATGGCTGTGCTGATGAACAAGTTGATTCTGTAACGAAACTCAGTTATGACTCATATGATGTGGTTAATATAATGGCGCATTCAACAGATGTCCCTCTCTCTTCGGAAGAACTTATTAAAATAAGAAAGTTATTGAAAAAGCACCAAAATCTGTGTCAAACTGAGTCTCCCAGAATTATTACTGAGAAGATAATGGGAGACAGTTTGAAAGAAAACTCTTTATTGCATGCTGAAGACAAGGAACAAGATGGAGTTCAGGGTATGGTTAGAGAAGAAATGAGTTTCTTCCGGAGAGTTGACAGAATGACATACGTCTCTACAGAGGCAGGAAAGGAAGCTAGTAAGAGTACAAACAGCAATATTTCCCAGGGTGGAGAATGTGATTCAGATACAGATTCTGATTCTGATTTTGAATCCACTGTACTTCAAGGGACAGCTCAGAACACTCTATTGTCGATGCTTGATAATCCCAGATATTCCAGTGATAGCTTAGATAACGATAGGACTAGAGGCCTTGCTGATCATTGTGGCGCTCAGTGGGATGTATTTCGCAGACAAGATGTTCCAAAACTAATAGAATACCTTAAACGACATTGTATTGAATTTGCTGATTCCCAGAACTACCAAAAGAAGATGATTCACCCAATTCTAGATCAGATCTTCTTTCTTGACAATACTCACAAAATAAGGCTTAAGGAGGAGTTTGAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATATCAGATCAAGAATCCAAAGTGTTGTGTTCACGTGATACTTGAATTTTTGTCCCCTGAAAATGTTACCGAGTCTATTGAATTGATTGATGAAGTCCATCTGGCTCCTGAGGGACATAGAGCAAAAGTGGATAAGCTGGAGATGAAGAAAATGGCCCTTTACAGCATGAGAACAGCGATTAAAGAAATAGGGGATCTTACATATAAAAAGTGA 2925 0.4089 MVEEEGVLPDHLRCSRTDGRQWRCRRRVMDNLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKNGSKNSKNDSFVLDNVEIRALNIGKKAKLIKKRPKFSDSSEAVDAHPVKKKALKQDGMQLELIRIVLKREIEKKKKQGENKKEEEEEEGEELIHNSEGELTKELPNGVMAISSASTPQHYANVGSYCNVKVGIEHKSISPRYFRSKNVEKLPAGKLQVLPLGRNLKKCRRKKCHWCQKSDSWNLIKCSSCQKEFFCMDCIKERYFETQNEVKMACPVCRGTCSCKDCLASQCKDSESKEYLASKGRVDRILCFHYMVCMLLPLLKQISEDHNIEVAKLKSKEKRTSDIQIKQVEFCCYEQNCWIPNKLKDGIASENHLLDVISNGNSTATSSPDRTICNGSGDLSCTPTELGGYGDCLHDLRCVFPISLIKEMETKAEEISCCYDFPESLDISSSCSLCLNSDNKIGRCKQWQEAALREDSNDNRLFYPTVLDISRDNFEHFQKHWRKGHPIVVRDVLQSNSNHSWDPLVMFCSYVEQSITRYQNDKDLLETCLDWCEVEINIKHYFSGSLRCQPQKNTWREMLKLKGWLSSQLFKEQFPTHFAQVMAALPLPEYMNPMSGILNLAANLPQGSAKHDIGPFVYMSYGCADEQVDSVTKLSYDSYDVVNIMAHSTDVPLSSEELIKIRKLLKKHQNLCQTESPRIITEKIMGDSLKENSLLHAEDKEQDGVQGMVREEMSFFRRVDRMTYVSTEAGKEASKSTNSNISQGGECDSDTDSDSDFESTVLQGTAQNTLLSMLDNPRYSSDSLDNDRTRGLADHCGAQWDVFRRQDVPKLIEYLKRHCIEFADSQNYQKKMIHPILDQIFFLDNTHKIRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIKNPKCCVHVILEFLSPENVTESIELIDEVHLAPEGHRAKVDKLEMKKMALYSMRTAIKEIGDLTYKK 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g1017 974 ProSiteProfiles JmjC domain profile. 620 937 IPR003347 -
Acco03g1017 974 MobiDBLite consensus disorder prediction 755 785 - -
Acco03g1017 974 Coils Coil 126 157 - -
Acco03g1017 974 ProSiteProfiles Zinc finger RING-type profile. 235 281 IPR001841 -
Acco03g1017 974 Gene3D Cupin 493 946 - -
Acco03g1017 974 Pfam WRC 9 50 IPR014977 -
Acco03g1017 974 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 359 IPR045109 GO:0032454|GO:0033169
Acco03g1017 974 SMART cupin_9 601 937 IPR003347 -
Acco03g1017 974 MobiDBLite consensus disorder prediction 756 775 - -
Acco03g1017 974 Pfam JmjC domain, hydroxylase 822 917 IPR003347 -
Acco03g1017 974 ProSiteProfiles WRC domain profile. 8 54 IPR014977 -
Acco03g1017 974 MobiDBLite consensus disorder prediction 136 160 - -
Acco03g1017 974 SUPERFAMILY Clavaminate synthase-like 498 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g1017 Acco-ChrAcco03 22332377 22337608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g1017 9 48 GRF Transcription Factor Family AT2G22840 50.000 1.85e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Acco03g1017 JmjC 7.6e-11 CL0029