LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco03g0955	ATGGCTGAGCAACAAATAAACATGGAATCTCCCTTAGAAGAAGAGCATGGTGAAAATAGAACCCAAGCAAGCTTACCATTTTTCAACATTAAAGCTATACAGTTTGCTATAAATAGTTTTTCAAGTGAGAATGAGTTAGGGCATGGTGGATTTGGCTCTGTCTATAAGGGCTTATTGATTAATGGACAAGAGATAGTAGTGAAAAGATTGTCTAAACGTTCAGGACAAGGGAATGAAGAGTTCAAGAATGAAATTAAACTGATTGCTAAATTGCAGCACAGGAATCTTGTAAGGTTGCTTGGATATTGCATTCATAAAGAAGAGAGGATGTTGATCTATGAGTACCTTCCCAACAAAAGCTTGGATTTCTACCTTTTTGATATCAATCAAAGATCTTCTTTAGATTGGGATAAACATGTTCATATCATTTTTGGAATTGCTCAAGGTCTTCTTTATCTTCATCGTGATTCAAGGTTGAAAATAATCCACAAAGACCTTAAAACTAGCAATATTCTCTTAGATGCTACGATGGACCCCAAAATTTTAGATTTTGGTATGGCTAGAATATTCGCAGAGGACCAAATCCAAGAAAGAACAAGGAGGATTGTTGGGACATATGGTTATATTGGGAGAAGAAATACAAATCGTGAAAAGGATGGATCACACTTGAATTTGATTGGACAAGTATGGGACTTATGGGGAGAAGGAAAGGTCTTGGAAGTAGTAGACCCTACACTTGATGTATCCTATCCTGTTGATGTTGTCCTAAGATATATCAAAATAGCGCTATTATGTGTGCAAGAAATTGTCGTCCAAAGGCCATCCATGTCAGAAGTTATATTCATTATTGGCAATGAAGGAAGCCTTCCCTCGCCTCAAAAACTTGCTTTTCTATTAAACTCTAATGATTTGTATTCAGAGACTTCAACCTCAAGGGAAGCTTCAGCTAATGTCCTCTCTCATTCTACAATGAGCGATCAATAA	984	0.3669	MAEQQINMESPLEEEHGENRTQASLPFFNIKAIQFAINSFSSENELGHGGFGSVYKGLLINGQEIVVKRLSKRSGQGNEEFKNEIKLIAKLQHRNLVRLLGYCIHKEERMLIYEYLPNKSLDFYLFDINQRSSLDWDKHVHIIFGIAQGLLYLHRDSRLKIIHKDLKTSNILLDATMDPKILDFGMARIFAEDQIQERTRRIVGTYGYIGRRNTNREKDGSHLNLIGQVWDLWGEGKVLEVVDPTLDVSYPVDVVLRYIKIALLCVQEIVVQRPSMSEVIFIIGNEGSLPSPQKLAFLLNSNDLYSETSTSREASANVLSHSTMSDQ	327

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco03g0955	327	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	4	115	-	-
	Acco03g0955	327	Gene3D	Transferase(Phosphotransferase) domain 1	116	209	-	-
	Acco03g0955	327	ProSitePatterns	Protein kinases ATP-binding region signature.	46	68	IPR017441	GO:0005524
	Acco03g0955	327	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Acco03g0955	327	Gene3D	Transferase(Phosphotransferase) domain 1	210	291	-	-
	Acco03g0955	327	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	20	306	-	-
	Acco03g0955	327	ProSiteProfiles	Protein kinase domain profile.	40	327	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0955	327	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase B120	116	207	-	-
	Acco03g0955	327	SMART	serkin_6	40	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0955	327	Pfam	Protein kinase domain	41	214	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0955	327	SUPERFAMILY	Protein kinase-like (PK-like)	24	311	IPR011009	-
	Acco03g0955	327	Gene3D	Phosphorylase Kinase; domain 1	3	115	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco03g0955	Acco-ChrAcco03	19852583	19854448	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco03g0955	28	301	Receptor kinase-like Gene Family	AT4G05200	49.835	4.33e-99	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Acco03g0955		Pkinase	1.1e-34	CL0016