Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0923 ATGGCTGCTCCCACTCCTACGCACCTCCCGGACCACTTCAAGTGTCCTATTTCGCTTGAGATAATGTCCGACCCTGTTATCCTCTCCTCCGGTCACACCTTTGATCGGTCTTCAATCCAGCGGTGGCTCGACGCCGGCCACCGGACTTGTCCAATTACGAAATTACCCCTCCCTGATTGCCCTTCCCTCATACCCAATCATGCTCTCAGAAGCTTGATTTCAAACTATTATCATATCTCAACATTTAAGCAGCAGCCTCCTCCCCAACCGGAAACCTTAATTTCCGCTATTACCTCTCGCTCGTCGTCATTGGAGAGCAAAATTGAATTGCTTGAACAACTTACGCGCCTTTCCAAGCGTGACTCTGTTTTCCGTTTGCGGGTGACTGAGTCAGGAGTTGTGTCGGCCGTGCTGAACTGCGTTGACTCTGGTGAGCCTAGTCTACAGGAGAAAGCTCTTTCGTTGTTGCTCAATCTTAGTCTTGACGACGATAACAAGGTGGGTTTGGTGGCGGAGGGTGCGATAGGGAAGGTTGTTGCTGTTCTGTTAGGTGGCTCACCGGGTTGCCGAGCAGTGGCGGCAACCATGTTGACGAGTTTAGCGGTTGTGGAGGTGAATAAAGCCACAGTTGGAGCATATCCATATGCTATAGGAGCTCTTGTTTCTATTCTTCGAGATGGTGAAGGCAGGGAGAAGAAAGAAGCGGCCACAGCGCTCTATGCTATATGTTCTTTCCCGGATAATCGGAGGAGAGCCGTAGAATGTGGGGCGGTCCCGATTTTGCTGAGAAGTGTTGATTCTGGGCTTGAAAGGGCTGTTGAAGTTCTTGGTGTGTTGGCTAAGTGTAGGGAAGGTAGAGAACAAATGGAAAGGTATAATGGATTCATACAGATTTTAGTACGGGTGTTGAAGAATGGAAGCTCGAGGGGGATTCAATATGCCCTGTTAGCATTAAATTCCGTTTGCTGTAATAGTGAAAACATGGTTCTGGAGGTGACTAAAGAAGGAGTTTTGGATATTTGTCTGGGACTGCTGGAGGATGATAATGAAAAAATAAGGAGAAATTCGTCCAGTCTGATTAAGGTTCTGCGTGGCAACCATCGGATAAGCTTGTTTGCTGGGCAGAATAAGTGCTTACCTTCACTTTGGAGGGGAAAAGTTCTTGAAGCAAAATGTTTCTGCACTCGTTTGGCAGGAGGCAAAGGACTTTTTGATAACATATTTATTGGATACAGCTGCCTTAGATGGTCTGGTTTTGTGTTGCCAAACTCGCAGTTACAACCAGATGAGTAA 1293 0.4733 MAAPTPTHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDCPSLIPNHALRSLISNYYHISTFKQQPPPQPETLISAITSRSSSLESKIELLEQLTRLSKRDSVFRLRVTESGVVSAVLNCVDSGEPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGKVVAVLLGGSPGCRAVAATMLTSLAVVEVNKATVGAYPYAIGALVSILRDGEGREKKEAATALYAICSFPDNRRRAVECGAVPILLRSVDSGLERAVEVLGVLAKCREGREQMERYNGFIQILVRVLKNGSSRGIQYALLALNSVCCNSENMVLEVTKEGVLDICLGLLEDDNEKIRRNSSSLIKVLRGNHRISLFAGQNKCLPSLWRGKVLEAKCFCTRLAGGKGLFDNIFIGYSCLRWSGFVLPNSQLQPDE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0923 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 83 IPR013083 -
Acco03g0923 430 Gene3D - 90 268 IPR011989 -
Acco03g0923 430 Gene3D - 269 364 IPR011989 -
Acco03g0923 430 SUPERFAMILY ARM repeat 92 381 IPR016024 -
Acco03g0923 430 SUPERFAMILY RING/U-box 6 77 - -
Acco03g0923 430 FunFam RING-type E3 ubiquitin transferase 8 81 - -
Acco03g0923 430 CDD RING-Ubox_PUB 10 59 IPR045210 -
Acco03g0923 430 ProSiteProfiles U-box domain profile. 8 83 IPR003613 GO:0004842|GO:0016567
Acco03g0923 430 PANTHER U BOX DOMAIN-CONTAINING 10 362 - -
Acco03g0923 430 SMART Ubox_2 12 76 IPR003613 GO:0004842|GO:0016567
Acco03g0923 430 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Acco03g0923 430 SMART arm_5 324 365 IPR000225 GO:0005515
Acco03g0923 430 SMART arm_5 282 323 IPR000225 GO:0005515
Acco03g0923 430 SMART arm_5 121 161 IPR000225 GO:0005515
Acco03g0923 430 SMART arm_5 162 202 IPR000225 GO:0005515
Acco03g0923 430 SMART arm_5 245 281 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0923 Acco-ChrAcco03 18867684 18871328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0923 9 365 U-box Gene Family AT4G21350 62.740 1.66e-156 445