Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0896 ATGAAGCTTCCTTCTTTTCACCTTCAGCTCCTGTGTCTGATTTCTGCAACAACAATCCACCATTGTTTCTGCCAACAAGAATACCTAAACAACACAGTCTATAACTGCACTTTCAACCTTACAAAGAAAGCTGGATATGTCTGTAATGGCCTCCACAAGTCATCATCATGCACTTCCTTTGTAACTTTCAGATCAAACCCTCCTTATTATGACACCCCTCTAACCATTTCCAATCTCCTTGGCTCTGAACCATCTTCCATAGCCTCCATCAACAGCAACATCTCAAGCAACAGCAACAAGAAGATTCCTTCGAATCGAACCGTGATTGTTCCGGTCTACTGTGCGTGTTCAGGCAATCTCTACCAGCATGCTACTTCTTATGAAATTGAAAAAGGAGACTACTACTACAAATTAACCAACAAGATTTATCAAGGCCTTGTCAATTGCCAGATGTTAGTACGTCAGAATTATTACCTTCCTGAAAATCTCAGTATTGGTGCTGAAGTTTCAGTTCCAGTTTTGTGTGCTTGTCCCACGGCGAAACAGATCGAAGATGGAGTCTCCGTTTTGCTGGTTCATACACTTGATTATGGGGATTCACTGGAATCAGTTGCAGAGTCTTATGGTGTGGATCAGCACAGTTTGATGGCTGCTAATGAGTTGACTTCAAATGAAACAGTTTATGTTTTCACTCCTATTTTAGTTCCCCTCAAGCCATCTTCTTGTAGACTCAATCCACATTTGTTCTATTGCACTTGTTCATTCTCTCAGCTTTATCCTTCGAATTCAAGTTTCAATAATCTCAATTGTGGTCATCTTCAACCTGATGCTCATCGTTTCCCTGTTAAATTGGTTGTTTCCATAGGTGTTGGTACCGGTGCTGGCTTTTTGTGCTTATTCCTTTTGGGTTACAAGTTACATCAATTCATCAAAGAAAAACAAGAAAAACTTCGAAAGGAAAAATTGTTTAGGCAAAATGGTGGCCTTTTGCTGCAAGAAAAGATGTCAAATTATGGAAATAGAGAAAGCACAAAACTTTTCACAGCAGAAGAACTCGAACGAGCCACAGATAGCTACAATCAAAGTAGGTTTCTTGGTCAAGGTGGGTATGGAACTGTTTATAAAGGAATGTTACCAGATGGTGCCATTGTTGCAGTTAAGAAGTCAAGAGAAATTGCAAGAAACCAGATTGAGACATTTGTTAATGAAGTTGTTATTCTATCCCAAATAAATCATAGGAACATTGTCAAACTCTTAGGTTGTTGCCTAGAGACTGAAAGCCCATTATTAGTTTATGAGTTTATTCCCAATCGGACACTCTCTCACCACATCCATAACAAGGAACTCAAATCAAACCTCTCATGGGACAACCGACTTAGAATTGCTTGCGAGGTTGCCGGGGCGCTGGCGTATATGCATTTTGCAGCTTCCATTCCCATCTTCCATAGAGACATCAAAACTTCCAACATACTTCTAGATCATCATTACAATGCCAAAGTTGCTGATTTTGGGTCTTCCAGATCAGTTCCAGAAGATAGGACCCACTTAACCACAGCAGTACAAGGCACTTTTGGGTACATTGATCCTGTCTACTTTCAAACAAGCCAATTCACAGATAGAAGTGATGTGTATAGTTTTGGGGTTGTACTTGTAGAGCTCATTACTGGAAGAAAACCCTTCTTAGAACAAGCAGAAGGTCAAAATATTGTCGCTGACTTCATTTCATTAATGAAGAATGACCAAGTTTTGGAGATTTTGGATGCTAGAGTTGTTAATGAAGGAGGGGAAGGTGATATTCTTGGCATTGCAAATCTTGCAATGAAATGTCTGAGACTTAATAGGAAGAAGAGACCCACAATGAGAGAGGTTTCAACAGAGCTAGAAGCAATGAGAAAGACGCAAAATGCCTTAGAGATTGCTGAATGTTCTCATGAGTTTCCAAATGGTAAGGACATCAGCTCTTCTTTTGGAACAATCCAAGAATCCACAGAAGAAAGCATGTCATTATTGCTCCAAATGGATTCCGCATCCATTTGA 2037 0.3991 MKLPSFHLQLLCLISATTIHHCFCQQEYLNNTVYNCTFNLTKKAGYVCNGLHKSSSCTSFVTFRSNPPYYDTPLTISNLLGSEPSSIASINSNISSNSNKKIPSNRTVIVPVYCACSGNLYQHATSYEIEKGDYYYKLTNKIYQGLVNCQMLVRQNYYLPENLSIGAEVSVPVLCACPTAKQIEDGVSVLLVHTLDYGDSLESVAESYGVDQHSLMAANELTSNETVYVFTPILVPLKPSSCRLNPHLFYCTCSFSQLYPSNSSFNNLNCGHLQPDAHRFPVKLVVSIGVGTGAGFLCLFLLGYKLHQFIKEKQEKLRKEKLFRQNGGLLLQEKMSNYGNRESTKLFTAEELERATDSYNQSRFLGQGGYGTVYKGMLPDGAIVAVKKSREIARNQIETFVNEVVILSQINHRNIVKLLGCCLETESPLLVYEFIPNRTLSHHIHNKELKSNLSWDNRLRIACEVAGALAYMHFAASIPIFHRDIKTSNILLDHHYNAKVADFGSSRSVPEDRTHLTTAVQGTFGYIDPVYFQTSQFTDRSDVYSFGVVLVELITGRKPFLEQAEGQNIVADFISLMKNDQVLEILDARVVNEGGEGDILGIANLAMKCLRLNRKKRPTMREVSTELEAMRKTQNALEIAECSHEFPNGKDISSSFGTIQESTEESMSLLLQMDSASI 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0896 678 CDD LysM 192 229 IPR018392 -
Acco03g0896 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Acco03g0896 678 FunFam Wall-associated receptor kinase 2 329 434 - -
Acco03g0896 678 SMART LysM_2 192 236 IPR018392 -
Acco03g0896 678 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 108 635 IPR045274 GO:0007166
Acco03g0896 678 SMART serkin_6 359 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g0896 678 Gene3D Phosphorylase Kinase; domain 1 327 434 - -
Acco03g0896 678 ProSiteProfiles LysM domain profile. 191 235 IPR018392 -
Acco03g0896 678 ProSitePatterns Protein kinases ATP-binding region signature. 365 388 IPR017441 GO:0005524
Acco03g0896 678 Gene3D Transferase(Phosphotransferase) domain 1 435 647 - -
Acco03g0896 678 SUPERFAMILY Protein kinase-like (PK-like) 340 627 IPR011009 -
Acco03g0896 678 ProSiteProfiles Protein kinase domain profile. 359 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g0896 678 Pfam LysM domain 193 236 IPR018392 -
Acco03g0896 678 CDD STKc_IRAK 365 628 - -
Acco03g0896 678 FunFam Wall-associated receptor kinase 2 435 647 - -
Acco03g0896 678 Pfam Protein kinase domain 359 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g0896 678 Gene3D LysM domain 188 243 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0896 Acco-ChrAcco03 18199761 18202694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0896 289 634 Receptor kinase-like Gene Family AT1G16130 54.286 1.41e-129 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Acco03g0896 Pkinase 3e-48 CL0016