LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco03g0854	ATGCCAGCTTCCAGAACACCACCGTTCCAGGAGGTGGCAGTGACACCATCTACGGCCTTTACATGTGCCGTGGTGACGTCTCCCTCCAGGGAGGGGAAGATCGGAGGAAGAGCTGTGAATCCCAGTTGCAACATTCGCTATGAGTTGTTTTCATTCTTTGATACGAATCAGCAAAATGCGTCGACACCGACACTGGCTCCAACACTAGCACCGGCCCCAGCTCCGGTACCTCGACTGGTTCCGTATGTCCCCGGAGCCAATTCTTTGCATCATCCTCCATCTCGACCTCCGGCAAGGACAATTGTGATAGTTGTGGCTTCACTTGTTGCTGGAGGGATAATTTTTTATTCAACTTGCTATCTCTTCAAGATTCGAATGAAGAAGAGTCATAGAGCTAATCTACGACAACAATATTTTGGAAGGGAAAGCACAACTTTAGAGCATCTACAATTTAGTCTAGCTACAATTGAGGCTGCGACAAATAAGTTTTCTCATGAAAATAGATTAGGGGGAGGTGGATTTGGACAAGTTTTCAAGGGTGTACTTCCAAATGGGCAAGACATAGCTGTGAAGAGACTTTCGAAAGGTTCTTGCCAAGGTGCAGCAGAGTTTAAGAATGAGGTTTTATTGATAGCTAGACTCCAGCACAGAAATTTGGTGGCTTTATTAGGATTCTGCATTGAAGACCAAGAGAAACTACTTGTTTATGAATATGTTCCTAACAGAAGCCTTGATTACTTTTTATTTGGTTCCCAAAATACTAGAGTGTTAGATTGGATGGAGCGTAGCAAAATAATAGGAGGAGCAGCTCGAGGAATTCTTTATCTTCATGAATATTCTCGTCTAAAAATCATACATCGAGATCTCAAACCTAGCAATATTTTGTTAGATGATGAAATGAATCCAAAAATTTCAGATTTTGGCCTAGCCAAGATGATTGCTATAAGTGAACAGGAGGGAAGTACAAATCGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATATTCTGAAAAGTCGGATGTTTTTAGTTTTGGAGTTATAGTTTTAGAAATTATCAGTGGAAAGAAGAATACAGGTTGTCATGATTCACAATATGTAGATGGCCTCTTAAGCTATACATGGAAGAAATGGAGGGATGACAAGTTGGTAGAGATATTGGATTCAAATATAAATGAATTGGGATCAAACAATGAAGTGATCAAGTGCATCCATATTGGTTTATTATGTGTTCAAGAAAATCCAAATACAAGGCCTTCCATGGCTATGGTTGTTTCATATCTCAGTAATGATTCTATTCAATTGCCATTACCACAGGAGCCTGCTTTCTTTTTGCATGGTCAAGCAGAGCCAATTACCACTAATGCAAGTGGAGAATCATGCTCTATTAATGAAGCTTCTATGAGTGAATTCTTTCCTCGCTGA	1443	0.4026	MPASRTPPFQEVAVTPSTAFTCAVVTSPSREGKIGGRAVNPSCNIRYELFSFFDTNQQNASTPTLAPTLAPAPAPVPRLVPYVPGANSLHHPPSRPPARTIVIVVASLVAGGIIFYSTCYLFKIRMKKSHRANLRQQYFGRESTTLEHLQFSLATIEAATNKFSHENRLGGGGFGQVFKGVLPNGQDIAVKRLSKGSCQGAAEFKNEVLLIARLQHRNLVALLGFCIEDQEKLLVYEYVPNRSLDYFLFGSQNTRVLDWMERSKIIGGAARGILYLHEYSRLKIIHRDLKPSNILLDDEMNPKISDFGLAKMIAISEQEGSTNRIVGTYGYMSPEYAMFGQYSEKSDVFSFGVIVLEIISGKKNTGCHDSQYVDGLLSYTWKKWRDDKLVEILDSNINELGSNNEVIKCIHIGLLCVQENPNTRPSMAMVVSYLSNDSIQLPLPQEPAFFLHGQAEPITTNASGESCSINEASMSEFFPR	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco03g0854	480	ProSitePatterns	Protein kinases ATP-binding region signature.	169	191	IPR017441	GO:0005524
	Acco03g0854	480	Pfam	Protein kinase domain	164	431	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0854	480	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	125	238	-	-
	Acco03g0854	480	ProSiteProfiles	Protein kinase domain profile.	163	449	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0854	480	SMART	serkin_6	163	434	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0854	480	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	284	296	IPR008271	GO:0004672\|GO:0006468
	Acco03g0854	480	FunFam	cysteine-rich receptor-like protein kinase 10	239	441	-	-
	Acco03g0854	480	CDD	STKc_IRAK	169	434	-	-
	Acco03g0854	480	Gene3D	Transferase(Phosphotransferase) domain 1	239	441	-	-
	Acco03g0854	480	SUPERFAMILY	Protein kinase-like (PK-like)	146	464	IPR011009	-
	Acco03g0854	480	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	36	463	-	-
	Acco03g0854	480	Gene3D	Phosphorylase Kinase; domain 1	123	238	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco03g0854	Acco-ChrAcco03	16861319	16867893	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco03g0854	7	480	Receptor kinase-like Gene Family	AT3G45860	46.169	8.58e-139	413

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Acco03g0854		Pkinase	1.7e-45	CL0016