Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0805 ATGGAGGATCGTAATAGTTGTTATGTTCATGATGAGTGGCAGTTGAACGCTTATGAGGGTCCAACCTTACTACCACCCACTTCTGCTTTTGGAGACACCTTATTGCACCCAAGCTTCAATCCCAAAATCAGTTGCATGCAAACTTCATCAGCTTCCATTAATTATGAAAGTCGACCCGCAAAGCAGATCAAAACCAGCAACACTACTACTACTTCATGTTGGAGCAGTCCCAATAATAATACTGATCATGAGATTCCAGATCAGCCGCAATTTGCTTCTTCGTGTCCAAACCTTGTTTCCTTTGTGAACCAGAACTACATAAATTATCAGATGGGATTAATGGGGAAGATCACAAATGATGATAAGGATGAGATTATTGGGACCAATAATAATGTTGTTGGTGATCATCATGTTTTGATGTCTCAAGAATCCTTGGAGAATCTAAACTATGGTGAGTTCATGACCACTAGTATATTAGATCAGGCAAGGAAGATTAATGGGACTATTATTGGTCCTAATGATAATAGTAATAGAGTTTCTCATCAACCAGTACATGACCACATCATTGCTGAAAGGAAACGAAGAGAGAAGCTTAGCCAGAGGTTCATTGCTCTCTCTGCCCTTGTTCCTGGTCTTACGAAGATGGACAAAGCTTCTGTACTTGGAGATGCTATAAAGTACATGAAGCAACTGCAAGAGAAAGTAAGGGTTCTTGAGGAGGAACAAACAACGGCAAAAACAGTTGAATCTGTAGTGATTGTGAGAAAATCTCAGTTTCTTCCTCGTGATTCTTCAGAATCTAATAATTCTTCAGATTCTTCTTCTGGTAGAGGTGGAGGATCATCATCATCCTTGCCAGAAATTGAAGCGAGGTTCTGTGAAATAAGCGTGCTCATAAGAATTCACTGTGAAAAAGTCAAAGGAATTGTCGAAAAAGCTATTGGTGTGATTGAGGATCTCCATTTAATAGTCACCAATAGTAATTCCATGACTTTTGGAAGTGCTGCTCTTGATATCACAATTATTGCTCAGATGGATTCAGAATTTTGCATGACACTGGACGATCTTGTGGGAAACCTACGATCAGCCTTTAAATCTTTCATGTGA 1107 0.3939 MEDRNSCYVHDEWQLNAYEGPTLLPPTSAFGDTLLHPSFNPKISCMQTSSASINYESRPAKQIKTSNTTTTSCWSSPNNNTDHEIPDQPQFASSCPNLVSFVNQNYINYQMGLMGKITNDDKDEIIGTNNNVVGDHHVLMSQESLENLNYGEFMTTSILDQARKINGTIIGPNDNSNRVSHQPVHDHIIAERKRREKLSQRFIALSALVPGLTKMDKASVLGDAIKYMKQLQEKVRVLEEEQTTAKTVESVVIVRKSQFLPRDSSESNNSSDSSSGRGGGSSSSLPEIEARFCEISVLIRIHCEKVKGIVEKAIGVIEDLHLIVTNSNSMTFGSAALDITIIAQMDSEFCMTLDDLVGNLRSAFKSFM 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0805 368 SMART finulus 188 237 IPR011598 GO:0046983
Acco03g0805 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 245 IPR036638 GO:0046983
Acco03g0805 368 PANTHER BHLH TRANSCRIPTION FACTOR 33 365 - -
Acco03g0805 368 Coils Coil 221 248 - -
Acco03g0805 368 Gene3D - 181 252 IPR036638 GO:0046983
Acco03g0805 368 MobiDBLite consensus disorder prediction 262 282 - -
Acco03g0805 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Acco03g0805 368 MobiDBLite consensus disorder prediction 262 285 - -
Acco03g0805 368 CDD bHLH_AtNAI1_like 186 257 - -
Acco03g0805 368 Pfam Helix-loop-helix DNA-binding domain 187 232 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0805 Acco-ChrAcco03 14480123 14483518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0805 186 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 57.923 2.02e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco03g0805 HLH 7e-10 No_clan