LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco03g0780	ATGAAGGTGGAAGGCGAGAGTAGGAGGAAGACACATCAGAGTGAAGATGAGATGGGCATAAGGAAGGGTCCTTGGACTGTGGAAGAGGACACCATTCTGGTCAATTACATTGCCATCCACAGCGAAGGTCGCTGGAATTCCATCGCCCGCTGTGCCGGTTTGAAGAGAACGGGCAAGAGTTGCAGGTTAAGGTGGCTGAACTACTTGCGTCCGGATGTTAGGCGTGGGAATATCACGCTGCAGGAACAGATAGTAATTCTTGATCTGCATTCTCGATGGGGAAACAGGTGGTCGAAAATAGTGCAGCACTTGCCGGGAAGAACAGACAATGAGATTAAGAATTATTGGAGGACGAGGGTGATGAAGCAGGCGAAGCAGCTCAAATGA	387	0.4987	MKVEGESRRKTHQSEDEMGIRKGPWTVEEDTILVNYIAIHSEGRWNSIARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLQEQIVILDLHSRWGNRWSKIVQHLPGRTDNEIKNYWRTRVMKQAKQLK	128

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco03g0780	128	Gene3D	-	79	120	-	-
	Acco03g0780	128	MobiDBLite	consensus disorder prediction	1	20	-	-
	Acco03g0780	128	CDD	SANT	24	69	IPR001005	-
	Acco03g0780	128	Pfam	Myb-like DNA-binding domain	75	118	IPR001005	-
	Acco03g0780	128	Pfam	Myb-like DNA-binding domain	22	69	IPR001005	-
	Acco03g0780	128	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	74	124	IPR017930	-
	Acco03g0780	128	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	18	128	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Acco03g0780	128	Gene3D	-	23	74	-	-
	Acco03g0780	128	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Acco03g0780	128	ProSiteProfiles	Myb-like domain profile.	17	69	IPR001005	-
	Acco03g0780	128	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	17	73	IPR017930	-
	Acco03g0780	128	FunFam	Myb transcription factor	22	74	-	-
	Acco03g0780	128	SUPERFAMILY	Homeodomain-like	18	116	IPR009057	-
	Acco03g0780	128	CDD	SANT	79	118	IPR001005	-
	Acco03g0780	128	SMART	sant	74	122	IPR001005	-
	Acco03g0780	128	SMART	sant	21	71	IPR001005	-
	Acco03g0780	128	FunFam	MYB transcription factor	78	120	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco03g0780	Acco-ChrAcco03	13750999	13751613	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco03g0780	7	128	MYB Transcription Factor Family	AT2G47190	74.590	2.76e-64	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Acco03g0780		Myb_DNA-binding	1.2e-15	CL0123