Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0761 ATGGGGAGAGTGAAGATTGAGATTAAAAGGATTGACAATTCAGCCAACAGGCAAATCACTTTCTCAAAGAGACGAACTGGCTTGCTCAAGAAAGCAAGAGAGCTTGCGATCCTCTGTGACGCACAAGTTGGAGTCATTGTGTTCTCTAGCACTGGCAGGCTCTATGAATATGGAAGCTCCAGCATGAAGTCAATTATTGAACGCTACAATAAACAAAAAGGGGAACGCCATCAGCTTATGAATCCAGCTGCAGAAGCTAAGTTTTGGCAGAGAGAAGCAACGGTCCTGAGGCAGAACCTTGAACACTTACAGGAATTGCACAGGCAATTCATGGGTGAACAACTTTCTGGTTTGGGAATCAACGAATTGAAAAGTTTGGAAAATCAACTGGAGATGAGTTTAAAAAAAGTCCAGATCAAGAAGGATCAAATTTTAAGTGATGAGATTAAAGAGTTAGCACACAAGGGACAGAAAATTTATCAAGAAAAGGTACAGCTTCACCAAACGATAGAAGTCATTAGGAAAGAAAATGCAGAACTACAGGCGAAGATTTGTGAAGCAAGGGTTGTGAATAAGGAAAATGGGGGTTCAAATCCTACATACACTATCAGCAACAAATATAGGTCACATGCACCTATGCATCTCCAGCCGAGCGAGCCACAGTCTCAATCCAGTGATGAATCACCAACCAAAGCAATGGAGCTGGGGTATAAATCCCTTCAAACTGATGAAATTACAGTTGCTTTAGCACTAGCTCTTTGA 762 0.416 MGRVKIEIKRIDNSANRQITFSKRRTGLLKKARELAILCDAQVGVIVFSSTGRLYEYGSSSMKSIIERYNKQKGERHQLMNPAAEAKFWQREATVLRQNLEHLQELHRQFMGEQLSGLGINELKSLENQLEMSLKKVQIKKDQILSDEIKELAHKGQKIYQEKVQLHQTIEVIRKENAELQAKICEARVVNKENGGSNPTYTISNKYRSHAPMHLQPSEPQSQSSDESPTKAMELGYKSLQTDEITVALALAL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0761 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco03g0761 253 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0761 253 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Acco03g0761 253 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Acco03g0761 253 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Acco03g0761 253 MobiDBLite consensus disorder prediction 212 230 - -
Acco03g0761 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco03g0761 253 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Acco03g0761 253 Coils Coil 163 183 - -
Acco03g0761 253 Coils Coil 120 143 - -
Acco03g0761 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco03g0761 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 214 - -
Acco03g0761 253 MobiDBLite consensus disorder prediction 212 231 - -
Acco03g0761 253 Coils Coil 86 106 - -
Acco03g0761 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco03g0761 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco03g0761 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco03g0761 253 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0761 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0761 Acco-ChrAcco03 13400783 13410172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0761 1 229 MADS-box Gene Family AT4G37940 51.528 1.21e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco03g0761 K-box 6.4e-22 No_clan