Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0757 ATGGGGAGAGGGAAGATTGTGATTAAGAGGATTGAGGATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTCAAGAAAGCAAGGGAGCTTTCGATCCTCTGCGACGCACAAGTTGGCGTTATTGTGTTTTCCAGCACTGGCAGGCTCTATGAATATGGAAGCTCCAGCATGAGATCCATTTTAGAGCGCTACAACAAACTAAGAGTGGAACACCATCATCATCAGTATATGAATCCTGAGTCGGAAGTCAAGTTTTGGCAGAGAGAAGTGATAGCATTGAGGCAACAACTGCAACATTTGCAAGAATGCCACAGGCAATTGATGGGTGAACAACTTTCTGGTTTGGGTATTATCGAACTGCAAAATTTGGAAAATCAACTTGAGATGAGTTTGAAGCGTGTCCGAATCAAAAAGAATCAAATTTTAACTGATGAGATTGAAGAGCTGCAACAAAAGGGAAATCAAATTCATCAAGAAAATGTACAACTTTATAAAAGGGTAAACTTCATCACTAAAGAAAATATAGAACTACAGAAGGTAAGTTCGGAAACACATTAA 573 0.3944 MGRGKIVIKRIEDSTSRQVTFSKRRNGLLKKARELSILCDAQVGVIVFSSTGRLYEYGSSSMRSILERYNKLRVEHHHHQYMNPESEVKFWQREVIALRQQLQHLQECHRQLMGEQLSGLGIIELQNLENQLEMSLKRVRIKKNQILTDEIEELQQKGNQIHQENVQLYKRVNFITKENIELQKVSSETH 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0757 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Acco03g0757 190 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Acco03g0757 190 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco03g0757 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco03g0757 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco03g0757 190 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Acco03g0757 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco03g0757 190 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Acco03g0757 190 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Acco03g0757 190 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0757 190 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco03g0757 190 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco03g0757 190 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco03g0757 190 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0757 190 Coils Coil 125 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0757 Acco-ChrAcco03 13234787 13241783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0757 1 172 MADS-box Gene Family AT4G37940 62.209 2.18e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco03g0757 K-box 1.5e-26 No_clan