Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0707 ATGGGTACTATGAGTCCACAGCCACTGCAAGTTCGGCCTTTCGAGGATGGAGAACTACAACTGGTGCAGGTTCCAATGCAGGTGGATGGTGTCGAAGATGGATTGAATGCTCAATGTGTCAATGGACGTCGTGACGAGGTGAATGATGGGGTAGAAGAAGCTCGAGTGAGTTCTGGGTTTTCAGGGACAAATGGGTGTCCTTTCAAGCCTCGAACCAGTGAACTCACCATTTCGTTTGAAGGAGAGGTCTATGTTTTCCCAGCGGTTACGCCAGAAAAGGTACAGGCTGTGTTGCTATTGTTGGGAGGGTGTGAGATGCCCAGCCCCTGTAGTGCCCCCAGCACTGAGCTCTTACTGCAACAGAACTATCAGAACATGAGGGGAATTAATGATACTTCCCGGGGTTCAAAGCTTTCACGGAGATTTGCATCCCTTGTTAGGTTTCGTGAAAAGCGAAAAGAGAGATGTTTTGAGAAGAAAATTCGGTACAGCTGTCGTAAGGAAGTTGCACAGAGGATGCATCGCAAGAATGGACAGTTTGCATCATCAAAGGAATGCGACAGTTCTGTTGCTGAAAACTGGGACTCTAGCAATGGTGCTGCTTGTTCAGAATCTAATGAACGTAAATGTCAACATTGTGGAATTAGTGAAAAGTCTACTCCAGCAATGCGGCGAGGACCAGCTGGTCCACGATCTCTATGCAATGCTTGTGGGCTAATGTGGGCAAATAAGGGGACTCTGAGAGATCTCAGCAAAACAGGAAAGGTCACTTCTATGGAACAAAATGAACTGGATACTTCAGCTGTGAGGAAGCCTTCCATGACTAAACCAGAAAATTCTTGTCCTGGGCAGAATGAGGAAGGAAGCCCCAAGGAGACAAAGCCTGAGCTGGTGGAATCTGGACAGTCACCCCAGAGGGTTAATGAGCAGTATACGCTTGAAACTGCTGAAGCAGTTACTGACAATTTATCCATCCAAGTGGAGAACCTTGATGTTAATATTCATGAGCAGGATACTCTTGAAGATCTTGCTGATGCTTCTGGAACAGATTTTGAGATTCCTACAGGTTTTGATGAGCAGATTGACATTGATGATTCCAACTTGAGGACCTACTGGTTATGA 1122 0.4626 MGTMSPQPLQVRPFEDGELQLVQVPMQVDGVEDGLNAQCVNGRRDEVNDGVEEARVSSGFSGTNGCPFKPRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGGCEMPSPCSAPSTELLLQQNYQNMRGINDTSRGSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASSKECDSSVAENWDSSNGAACSESNERKCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKTGKVTSMEQNELDTSAVRKPSMTKPENSCPGQNEEGSPKETKPELVESGQSPQRVNEQYTLETAEAVTDNLSIQVENLDVNIHEQDTLEDLADASGTDFEIPTGFDEQIDIDDSNLRTYWL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0707 373 Gene3D - 201 264 IPR013088 GO:0006355|GO:0008270
Acco03g0707 373 MobiDBLite consensus disorder prediction 252 287 - -
Acco03g0707 373 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Acco03g0707 373 ProSiteProfiles CCT domain profile. 141 183 IPR010402 GO:0005515
Acco03g0707 373 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Acco03g0707 373 PANTHER GATA TRANSCRIPTION FACTOR 28 36 352 IPR045280 GO:0006355
Acco03g0707 373 MobiDBLite consensus disorder prediction 252 305 - -
Acco03g0707 373 Pfam GATA zinc finger 210 246 IPR000679 GO:0006355|GO:0043565
Acco03g0707 373 Pfam tify domain 70 102 IPR010399 -
Acco03g0707 373 CDD ZnF_GATA 209 252 IPR000679 GO:0006355|GO:0043565
Acco03g0707 373 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 257 - -
Acco03g0707 373 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
Acco03g0707 373 Pfam CCT motif 141 183 IPR010402 GO:0005515
Acco03g0707 373 ProSiteProfiles GATA-type zinc finger domain profile. 204 260 IPR000679 GO:0006355|GO:0043565
Acco03g0707 373 SMART tify_2 68 103 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0707 Acco-ChrAcco03 11488965 11496517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0707 74 258 Tify Gene Family AT1G51600 55.155 1.32e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco03g0707 CCT 5.8e-14 CL0281