Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0645 ATGATCGAGATTAGACATGGTCGATTTCGATTTTACCATTTTTGTTTATTGAGTTCAGTTCAGTTGGTTCTCATGGACAAAACAAGTGAAAATACATCAAAAGAAACTCTGCGTGAGTATGAAGTTACAGAAGACCAAACTCTTGAAGATTTAGGATTGGATGCACGCCTAGTTCATGCCTTACTAAAAAAGGGAGTTGAGAAACCAACTCCAATTCAACAGGTGGCCATTCCACTCATATTGCAAGGTAAGGATGTGGTTGCTCGAGCAAAGACAGGTTCTGGCAAGACATTTGCATACCTTCTTCCATTGCTGCAAAAATTGTTCACTAATAATTTTCAAAAAAAGAAGCTATCACCCAATGCATTCATTCTTGTGCCAACTCGAGAACTATGTCAACAGGTATATGCAGAGGTTTCATCTCTCATTGAACTATGCAGAGTTCAATTGAAAGCTGTGCAATTGACAAGCAATATGAAGGCTTCTGATCTGCGGACTGCAATGACTGGACCACCTGATGTTTTGATTTCCACACCTGCCTGTGTTGCTAAATGCTTGTCCACTGGCATACTTAAATCAACATCCTTGAATAGTTGCCTTGAAACTCTAGTTCTCGATGAGGCAGATCTTCTATTGTCATACGGCTATGAAAATGATATAAAAGCCTTTTCAGCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCCTTTATTTTGACTTTGCCTGAACTAGGAAACCAGAAGGATGAGATTATCCCTAAAAATGTTCAACAATTTTGGATCTCATGCCCCAGCGGTGATAAGCTGCTTTACATCCTTGCCTTGTTGAAGTTAGAGTTGGTACAAAAGAAAGTTCTAATATTTACCAATAACATAGATATGAGTTTCAAATTGAAACTCTTCTTGGAAAAGTTTGGAATCAAGTCTGCTGTTTTAAATGCCGAGTTGCCACAGAATTCTCGTCTCCATATTCTCGAGGAATTCAATGCTGGCCTCTTTGATTATCTTATTGCAACTGATGACAATCACTTAAAGGAGAAGGATGAAGCAACTAAAGAAAATAATGGGGAGTTGCGGCGGTCCAAAAAACTTGTCAAGCAAAAATTAGATTCTGAATTTGGAGTTGTGAGGGGAATTGACTTTAAAAATGTTTACACGGTTATAAACTTTGAAATGCCTCAAAGTGTGGCAGGATATGTCCATAGAATAGGACGTACTGGAAGAGGATACAATTCTGGTTCTTCTGTATCTTTGGTTTCTACTGATGAGATGGAAACTTTGGATGAAATAAGATCTTTTATTGGGGATGATGAAAACAATGGTTCAAACACAATTGCTGAATTTCCATTGCTTACGAAGAATGCTGTGGAATCTTTACGGTACCGGGCTGAGGATGTTGCAAAGAGTGTTACTAGAATTGCAGTTCGTGAATCACGAGCCCAGGATTTGAGGAATGAAATTCTAAACTCTGAAAAGTTGAAGGCACACTTTGAATCTAATCCAAGGGACTTAGATCTATTGAAGCATGATAAAGTTTTGAGCAAAAATGCCCCTCCTGCTCACCTACGGGATGTGCCAGAGTATTTAGTAGACAAAACAACCAAAGAGGCAAGGGCAATGGTCAAGCTTGTGAGGGATGCAATGGGAAATAATAATCGATCACGAGGATCCAAAAGGAAAAAGTTCAGAAAAGGTGGAGACCCTCTGAAAGCTATATCTGCCAAGGGGCAGAAAAGACCACACAAAGGGGATGGACATAAACGCAGGAAGAAAAATGAAGTTTGA 1842 0.3936 MIEIRHGRFRFYHFCLLSSVQLVLMDKTSENTSKETLREYEVTEDQTLEDLGLDARLVHALLKKGVEKPTPIQQVAIPLILQGKDVVARAKTGSGKTFAYLLPLLQKLFTNNFQKKKLSPNAFILVPTRELCQQVYAEVSSLIELCRVQLKAVQLTSNMKASDLRTAMTGPPDVLISTPACVAKCLSTGILKSTSLNSCLETLVLDEADLLLSYGYENDIKAFSAHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPELGNQKDEIIPKNVQQFWISCPSGDKLLYILALLKLELVQKKVLIFTNNIDMSFKLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDNHLKEKDEATKENNGELRRSKKLVKQKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRGYNSGSSVSLVSTDEMETLDEIRSFIGDDENNGSNTIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPAHLRDVPEYLVDKTTKEARAMVKLVRDAMGNNNRSRGSKRKKFRKGGDPLKAISAKGQKRPHKGDGHKRRKKNEV 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0645 613 Coils Coil 499 519 - -
Acco03g0645 613 Pfam DEAD/DEAH box helicase 70 247 IPR011545 GO:0003676|GO:0005524
Acco03g0645 613 Pfam Helicase conserved C-terminal domain 286 428 IPR001650 -
Acco03g0645 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 293 475 IPR001650 -
Acco03g0645 613 PANTHER RNA HELICASE 32 551 - -
Acco03g0645 613 MobiDBLite consensus disorder prediction 564 613 - -
Acco03g0645 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 454 IPR027417 -
Acco03g0645 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Acco03g0645 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 259 IPR027417 -
Acco03g0645 613 CDD DEADc_DDX56 53 260 - -
Acco03g0645 613 CDD SF2_C_DEAD 275 438 - -
Acco03g0645 613 Gene3D - 19 260 IPR027417 -
Acco03g0645 613 Gene3D - 263 467 IPR027417 -
Acco03g0645 613 SMART helicmild6 315 429 IPR001650 -
Acco03g0645 613 SMART ultradead3 65 278 IPR014001 -
Acco03g0645 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 258 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0645 Acco-ChrAcco03 9770771 9781057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0645 47 469 Eukaryotic Initiation Factors Gene Family AT3G19760 26.698 2.44e-36 139