Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0643 ATGACGAAAAGGAAGATAGCGATAAAGAAGATAGAGAACGTAGCAGCGAGGCAGGTGGCTTTTTCAAAGAGAAGGAAAGGTCTCTTCAAGAAAGCAGTGGAGCTTTCTACTCTCTGTGATGCTGAGATTGCCCTCTTGGTGTTTTCTGCTTCTGGCAAACTCTTTGATTATGCCAGTACAAGAGTGAGTGTTCGCATACGGCGGCTCTAA 210 0.4524 MTKRKIAIKKIENVAARQVAFSKRRKGLFKKAVELSTLCDAEIALLVFSASGKLFDYASTRVSVRIRRL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0643 69 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 63 - -
Acco03g0643 69 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco03g0643 69 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco03g0643 69 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco03g0643 69 Gene3D - 13 69 IPR036879 GO:0003677|GO:0046983
Acco03g0643 69 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco03g0643 69 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco03g0643 69 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco03g0643 69 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0643 Acco-ChrAcco03 9725468 9725812 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0643 1 62 MADS-box Gene Family AT4G24540 64.516 1.83e-25 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco03g0643 SRF-TF 4e-24 No_clan