Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0642 ATGACGAGAAGGAAGATAGCGATAAAGAAGATAGAGAACTTAGCAGCGAGACAGGTGGCTTTTTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCTATGGAACTTTCAACTCTCTGTGATGCTGAGATTGCTCTCTTTGTGTTTTCAGCTTCTGGAAAACTCTTTGATTATGCCAGTACAAGGATTGTGAAACAAGTTACCTTAAACATATCGAAAGATGTTGAGAATTGTTGTGCAGTTGATGACAAATATGAACTGATATGCAACATTTTTGCGGTTTCAAGCACGAGGCAAGTGATAGAAAGGAGAAACTTGTTATCAGATGTAAACCATGCCAACACAAACCAGTCATCTCTGGAGTGGCAGGCTGAAGCATGTGAGCAAGAGATCAGTATTCTTAAGAAAGAGGAAGCCAGACTGATGGAAGAAAACCAGAGACTAAATCAGGAAGTCAAATTCTTGGAAGAAAATCAGAGATTAGAACAGGTTCAAAGGCTTGAACAAGATCAAGACCAGTCATTATTGGCCACCTCTCTCACAACGAGGTTACTTTTTCGCTGA 561 0.4029 MTRRKIAIKKIENLAARQVAFSKRRKGLFKKAMELSTLCDAEIALFVFSASGKLFDYASTRIVKQVTLNISKDVENCCAVDDKYELICNIFAVSSTRQVIERRNLLSDVNHANTNQSSLEWQAEACEQEISILKKEEARLMEENQRLNQEVKFLEENQRLEQVQRLEQDQDQSLLATSLTTRLLFR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0642 186 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Acco03g0642 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco03g0642 186 Coils Coil 116 164 - -
Acco03g0642 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Acco03g0642 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco03g0642 186 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Acco03g0642 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco03g0642 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco03g0642 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco03g0642 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco03g0642 186 CDD MADS_MEF2_like 3 64 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0642 Acco-ChrAcco03 9696518 9701470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0642 1 160 MADS-box Gene Family AT2G22540 36.264 1.13e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco03g0642 SRF-TF 8.1e-23 No_clan