Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0641 ATGACGAGAAGGAAGATAGCGATAAAGAAGATAGAGAACTTAGCAGCGAGGCAGGTGGCTTTTTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCTATGGAGCTTTCAACTCTCTGTGATGCTGAGATTGCTCTCTTTGTGTTTTCAGCTTCTGGAAAACTCTTTGATTATGCCAGTACAAGCTCGAGGCAAGTGATAGGACGGAGAAGCTTGTTCTCAGATGTAAACCATGCCAACACATACCAGTCATCTCTTGAGTTGCAGGTAGGAGGTGAACATTTTAAGCTAGACAAGGAACTAAAAGAGAAGACTCGTGAATTGAGAGGTTTCCGATAG 336 0.4315 MTRRKIAIKKIENLAARQVAFSKRRKGLFKKAMELSTLCDAEIALFVFSASGKLFDYASTSSRQVIGRRSLFSDVNHANTYQSSLELQVGGEHFKLDKELKEKTRELRGFR 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0641 111 CDD MADS_MEF2_like 3 68 IPR033896 GO:0000977|GO:0045944
Acco03g0641 111 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco03g0641 111 Coils Coil 100 111 - -
Acco03g0641 111 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 78 - -
Acco03g0641 111 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco03g0641 111 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco03g0641 111 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco03g0641 111 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco03g0641 111 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco03g0641 111 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Acco03g0641 111 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0641 Acco-ChrAcco03 9631619 9634028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0641 1 111 MADS-box Gene Family AT2G22540 51.327 8.23e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco03g0641 SRF-TF 2.8e-23 No_clan