Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0638 ATGACGAGAAGAAAGATAGCGATGGAGAAGATAGAAAACTTGGCAGCGAGGCAGGTGGCTTTTTCAAAGAGACGGAAAGGTCTCTTCAAGAAGGCTATGGAGCTTTCAACTCTCTGTGATGCTGAGATTGCTCTCTTTGTTTTTTCTGCTTCTGGCAAACTCTTTGATTATGCCAGTACAAGCGTGAGGCAGGTAATTGAAAGGAGGAACCTGTATTCAGATGTGAACCTTGTCAAGTCATACCAGCCATCTCAAGAGATACAGGTTGTAGGTGAATATTTTAAGCTTAACAAGGAACTAAAACAGAAGACGCAAGAACTGAGACACCTCAATGGAGAAGAACTACAAGCATTGTCCCTAAAAGACCTAAGGAAACTAGAAGCTTTGCTTAACACAAGCTTAAATCGCATCTCAAAAGCAAAGGTTTGTAAATGA 435 0.4115 MTRRKIAMEKIENLAARQVAFSKRRKGLFKKAMELSTLCDAEIALFVFSASGKLFDYASTSVRQVIERRNLYSDVNLVKSYQPSQEIQVVGEYFKLNKELKQKTQELRHLNGEELQALSLKDLRKLEALLNTSLNRISKAKVCK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0638 144 Coils Coil 93 113 - -
Acco03g0638 144 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Acco03g0638 144 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Acco03g0638 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco03g0638 144 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco03g0638 144 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco03g0638 144 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco03g0638 144 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco03g0638 144 Pfam K-box region 87 141 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0638 144 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco03g0638 144 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 139 - -
Acco03g0638 144 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0638 Acco-ChrAcco03 9533953 9537184 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0638 1 144 MADS-box Gene Family AT2G22540 50.685 1.79e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco03g0638 K-box 6e-10 No_clan