Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0636 ATGACGAGAAGGAAGATACAGATAAAGAAAATAGACAGTATAACAGCAAGGCAAGTGACTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACAGGAGCTCTCAACTCTTTGTGATGCTGAGATTGCCCTCTTAGTCTTCTCTTCCACTGGCAAGCTTTTTGATTATGCTAGCTCAAGTATGCAGCAGGTAATTGAAAGGTATGATCAACATTCAGCCATTCAAAGACTAGGCCAATCATCTGTTGATCTGCAGCTTGAAGGTGATGAGAACAAGCTGAGCAAGGTAGTGGCAAAAAGGACCCATGAATTGAGGCGATTGAATGGGGAAGAACTTCTGGAATGCACACTTGAAGAATTGCAGGAACTAGAGGAAAGACTTCAAAGAGGCTTGTCCCGTGTTTCAAAGACAAAGGATGAAAGAATCGTCAAACAGATCAACGCACGTAAGAGAAAGGGAATCCAACTCACGGAACAAAATCAAAGAATGAAGCAGAGACTTGCACAAGAACAAGGGCAGTCTTCTGAGTCCATCATCATTTGCAGTTCATCTGACAATCCTCCTCAAGACTGTGATAGTTCAGATACATCTCTCAAGTTGGGGTTGTCTTTATTCAAATAG 624 0.4215 MTRRKIQIKKIDSITARQVTFSKRRKGLFKKAQELSTLCDAEIALLVFSSTGKLFDYASSSMQQVIERYDQHSAIQRLGQSSVDLQLEGDENKLSKVVAKRTHELRRLNGEELLECTLEELQELEERLQRGLSRVSKTKDERIVKQINARKRKGIQLTEQNQRMKQRLAQEQGQSSESIIICSSSDNPPQDCDSSDTSLKLGLSLFK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0636 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco03g0636 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco03g0636 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco03g0636 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco03g0636 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco03g0636 207 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0636 207 Coils Coil 107 141 - -
Acco03g0636 207 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Acco03g0636 207 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Acco03g0636 207 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Acco03g0636 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco03g0636 207 Pfam K-box region 87 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0636 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Acco03g0636 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco03g0636 207 FunFam Transcription factor, MADS-box 13 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0636 Acco-ChrAcco03 9395116 9399273 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0636 1 203 MADS-box Gene Family AT2G22540 47.034 2.33e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco03g0636 K-box 3.4e-12 No_clan