Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0633 ATGCCTTCTCTCTCTCTCTCTACACTCTCTCTCTCCTCCCTCTCTGTGTTTCTTCGCCCATCACATCATTGGCTCAAGCTTGCTCTTCAGCTGAGGGAATTGATTCCAGGTTCTTGGAAGAAGATTGAAATAAAGAAGATTGATAACATAACTGCGAGGCAAGTGACATTTTCAAAGAGAAGAAGAGGGCTTTTCAAGAAGTCTCAGGAACTCTCTACTCTCTGTGATGCTGAGATTGCTCTTATAGTCTTTTCTTCTACTGGCAAGCTCTTCGAATATGCTAGCTCAAGTGTGCAGCAGGTTATCGAAAGACATGATCAGCACACAGAAATTGGAAATTTATATCATTCATCTGTTTTGTATGAGAAGGAAACCTTCAGCGTGCTCCGCAAGGAAGAAGCTAATAAAATTCAGGAATTGCGGAAGTTGATGGGAGAAGATCTTGAAGGATTGAACACAAATGAATTACAGGAGCTGGAGGAACAAGTAAAAAATGGTTTGGGCCGTGTTGTCAAAGCAAAGGATGAAATGTTCATGAACGAGATCAATGCGCTCAAGAGAAAGAGAGTTCAGCTGATGGAAGAAAATCAGAGATTGAAACAGGTGAAGGACGTTGCCGAACAACAATTGCAAGCTCATTATTCATCTGAGTCAGCCAATAATGGCAATACGTCTGATCCCCCACATGACGGTCATAGTTCAGACACCTCTCTCAGATTGGGATTGTCTTTATTTAGTTAA 741 0.417 MPSLSLSTLSLSSLSVFLRPSHHWLKLALQLRELIPGSWKKIEIKKIDNITARQVTFSKRRRGLFKKSQELSTLCDAEIALIVFSSTGKLFEYASSSVQQVIERHDQHTEIGNLYHSSVLYEKETFSVLRKEEANKIQELRKLMGEDLEGLNTNELQELEEQVKNGLGRVVKAKDEMFMNEINALKRKRVQLMEENQRLKQVKDVAEQQLQAHYSSESANNGNTSDPPHDGHSSDTSLRLGLSLFS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0633 246 SMART madsneu2 37 96 IPR002100 GO:0003677|GO:0046983
Acco03g0633 246 CDD MADS_MEF2_like 40 110 IPR033896 GO:0000977|GO:0045944
Acco03g0633 246 Coils Coil 182 212 - -
Acco03g0633 246 MobiDBLite consensus disorder prediction 213 246 - -
Acco03g0633 246 Coils Coil 156 176 - -
Acco03g0633 246 ProSiteProfiles K-box domain profile. 119 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0633 246 SUPERFAMILY SRF-like 40 117 IPR036879 GO:0003677|GO:0046983
Acco03g0633 246 Gene3D - 49 118 IPR036879 GO:0003677|GO:0046983
Acco03g0633 246 PRINTS MADS domain signature 39 59 IPR002100 GO:0003677|GO:0046983
Acco03g0633 246 PRINTS MADS domain signature 59 74 IPR002100 GO:0003677|GO:0046983
Acco03g0633 246 PRINTS MADS domain signature 74 95 IPR002100 GO:0003677|GO:0046983
Acco03g0633 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 93 IPR002100 GO:0003677|GO:0046983
Acco03g0633 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 40 208 - -
Acco03g0633 246 FunFam Transcription factor, MADS-box 49 118 - -
Acco03g0633 246 Pfam K-box region 123 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0633 246 ProSiteProfiles MADS-box domain profile. 37 97 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0633 Acco-ChrAcco03 9330285 9338144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0633 38 242 MADS-box Gene Family AT2G22540 47.660 1.17e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco03g0633 K-box 4.8e-16 No_clan