Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0632 ATGTGGAGGAGGTTCCACGCGCATCGTCTGGGGAGCGATGTTTCATCGGATGGTGTTGTGTGGGGCCCAGTGCCTGCCACCATGTCACTATTAAGTCCACAAAAGGAAAGAAAACGAAACAAGGAACCCCGTTCGATTTCAAATTCTTTGGAAATGACAAGGCAGAAGATAGAAATAAAGAAGATAGATAACATAACTGCGAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGACTTTTCAAGAAAGCTCAGGAGCTCTCTACTCTCTGTGACGCTGAGATTGCTCTCATAGTCTTTTCTTCTACTGGCAAGCTCTTTGATTATGCTAGCTCAAGCGTGCAGCAGGTTATTGAAAGGCGTGGTCGGCTCTCAGAAACTGAGAGATTAGATCATCCTTCTATAGAGTATGACAGGGACGCCTTAAGCATGCTCAGCAAGGAAGAAGCCAATAAGGTTAGGGAACTGGGGCAGTTGAATGGAGAAGGGCTTGAAGGATTGAACACAAGTGAACTACAAAAGCTTGAAGAGCAATTAGAAAAAGGTTTAAAACGTGTTTCCAAAGCAAAGGACGAACTAATGTTTAAAGGGATCAATGAGCTCAAGAGAAAGAGAACCCGATTGATGGAAGAGAAACAGCGATTAGAACAGGTGATGAGGAATGTTGCACAAGAACAAGGTCAGTCATCTGAGTCAGCCAATATTGGCAGCATATTTGATCCTCCACTTGACGATGATAGTTCAGACACTTCTCTCAGGTTGGGATTGTCGTTGTTTAAATGA 780 0.4372 MWRRFHAHRLGSDVSSDGVVWGPVPATMSLLSPQKERKRNKEPRSISNSLEMTRQKIEIKKIDNITARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSSTGKLFDYASSSVQQVIERRGRLSETERLDHPSIEYDRDALSMLSKEEANKVRELGQLNGEGLEGLNTSELQKLEEQLEKGLKRVSKAKDELMFKGINELKRKRTRLMEEKQRLEQVMRNVAQEQGQSSESANIGSIFDPPLDDDSSDTSLRLGLSLFK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0632 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 61 108 IPR002100 GO:0003677|GO:0046983
Acco03g0632 259 Gene3D - 64 132 IPR036879 GO:0003677|GO:0046983
Acco03g0632 259 CDD MADS_MEF2_like 54 125 IPR033896 GO:0000977|GO:0045944
Acco03g0632 259 Coils Coil 171 191 - -
Acco03g0632 259 MobiDBLite consensus disorder prediction 219 249 - -
Acco03g0632 259 SUPERFAMILY SRF-like 52 131 IPR036879 GO:0003677|GO:0046983
Acco03g0632 259 ProSitePatterns MADS-box domain signature. 54 108 IPR002100 GO:0003677|GO:0046983
Acco03g0632 259 SMART madsneu2 52 111 IPR002100 GO:0003677|GO:0046983
Acco03g0632 259 FunFam Transcription factor, MADS-box 64 133 - -
Acco03g0632 259 ProSiteProfiles MADS-box domain profile. 52 112 IPR002100 GO:0003677|GO:0046983
Acco03g0632 259 Coils Coil 197 227 - -
Acco03g0632 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 54 227 - -
Acco03g0632 259 MobiDBLite consensus disorder prediction 219 235 - -
Acco03g0632 259 PRINTS MADS domain signature 89 110 IPR002100 GO:0003677|GO:0046983
Acco03g0632 259 PRINTS MADS domain signature 54 74 IPR002100 GO:0003677|GO:0046983
Acco03g0632 259 PRINTS MADS domain signature 74 89 IPR002100 GO:0003677|GO:0046983
Acco03g0632 259 ProSiteProfiles K-box domain profile. 134 227 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0632 259 Pfam K-box region 139 216 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0632 Acco-ChrAcco03 9298474 9307339 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0632 52 255 MADS-box Gene Family AT2G22540 48.729 4.78e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco03g0632 K-box 1.3e-13 No_clan