Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0630 ATGGGAAGAAAAGCTTACGCAAGAAAAAGTGGAGGAGGTTCCACGCCCAATCTAGGGTTAATTCCAGATTCTTTGGAAATGACAAGGCAGAAGATAGAAATAAAGAAGATAGATAACATAACTGCGAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTCAGGAGCTCTCTACTCTCTGTGACGCTGAGATTGCTCTCATAGTCTTTTCTTCTACTGGCAAGCTCTTTGATTATGCTAGCTCAAGCGTGCAGCAGGTTATTGAAAGGTGTGGTCCGCTCTCAGAAACTGAAAGATTAGACCATCCTTCTATAGAGTATGACAGGGACTCCTTAAGCATGCTCAGCAAGGAAGAAGCCAATAAGGTTAGGGAACTGAGGCAGTTGAATGGAGAAGAGCTTGAAGGATTGAGCACAAGTGAATTACAAAAGCTTGAAGAGCAATTAGAAAAAGGTTTAAAACGTGTTTCCAAAGCAAAGGATGACCTTATGTTTAAAGGGATCGATGAGCTCAAGAGAAAGAGAACCCAATTGATGGAAGAGAAACAGCGATTAGAACAGTATAGAATGGAAGCTTTTGAAAGTGTTTTAAATGAGAGGAACGTCTACTTCATTGCTTTTGAAAGTATTCTCAGATCACTTGTTTCAAAAAGAGTCTTGAAAGATGGAAAATTTGTTTGTTTAGGTGATGAGGAATGTTGCACAAGAACAAGATTGTCGTTGTTTAAATGA 744 0.3965 MGRKAYARKSGGGSTPNLGLIPDSLEMTRQKIEIKKIDNITARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSSTGKLFDYASSSVQQVIERCGPLSETERLDHPSIEYDRDSLSMLSKEEANKVRELRQLNGEELEGLSTSELQKLEEQLEKGLKRVSKAKDDLMFKGIDELKRKRTQLMEEKQRLEQYRMEAFESVLNERNVYFIAFESILRSLVSKRVLKDGKFVCLGDEECCTRTRLSLFK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0630 247 MobiDBLite consensus disorder prediction 1 20 - -
Acco03g0630 247 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Acco03g0630 247 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Acco03g0630 247 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Acco03g0630 247 ProSiteProfiles K-box domain profile. 109 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco03g0630 247 FunFam Transcription factor, MADS-box 39 108 - -
Acco03g0630 247 Coils Coil 172 195 - -
Acco03g0630 247 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
Acco03g0630 247 Gene3D - 39 107 IPR036879 GO:0003677|GO:0046983
Acco03g0630 247 ProSitePatterns MADS-box domain signature. 29 83 IPR002100 GO:0003677|GO:0046983
Acco03g0630 247 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
Acco03g0630 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
Acco03g0630 247 SUPERFAMILY SRF-like 28 106 IPR036879 GO:0003677|GO:0046983
Acco03g0630 247 Coils Coil 146 166 - -
Acco03g0630 247 CDD MADS_MEF2_like 29 94 IPR033896 GO:0000977|GO:0045944
Acco03g0630 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 176 - -
Acco03g0630 247 Pfam K-box region 113 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0630 Acco-ChrAcco03 9237450 9246136 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0630 27 191 MADS-box Gene Family AT2G22540 56.805 1.07e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco03g0630 K-box 1.6e-15 No_clan