Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0621 ATGACAAGGCAGAAGATAGAAATAAAGAAGATAGATAACATAACAGCGAGGCAAGTGACGTTTTCGAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTCAGGAGCTCTCTACTCTCTGTGACGCTGAGATTGCTCTCATGGTCTTTTCTTCTACTGGCAGGCTCTTTGATTATGCTAGCTCAAGCATTCACTCTTCGCAAGTATTTCTAGGTTTATGA 216 0.4167 MTRQKIEIKKIDNITARQVTFSKRRRGLFKKAQELSTLCDAEIALMVFSSTGRLFDYASSSIHSSQVFLGL 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0621 71 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Acco03g0621 71 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco03g0621 71 Gene3D - 13 67 IPR036879 GO:0003677|GO:0046983
Acco03g0621 71 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco03g0621 71 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco03g0621 71 SUPERFAMILY SRF-like 1 63 IPR036879 GO:0003677|GO:0046983
Acco03g0621 71 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco03g0621 71 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco03g0621 71 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco03g0621 71 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco03g0621 71 CDD MADS_MEF2_like 3 64 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0621 Acco-ChrAcco03 9171394 9174189 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0621 1 62 MADS-box Gene Family AT2G22540 74.194 6.44e-30 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco03g0621 SRF-TF 7.7e-25 No_clan