Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0617 ATGTCACAGGCTCAGGTAGCCAATGGGATTGATTTTCGATGTTGTGGATTTTGTGTTGATTTAGAGAGGGAAATGACGAGAAAGAAGATAGAGATAAAGAAGATAGATAACATAACAGCGAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCCAAGGAACTTGCTACGCTTTGTGATGCTGAGATTGGTCTCATTGTCTTTTCTTCCACTGGAAAGCTCTACGACTATGCTAGCTCAAGACTTCAATTTCTATCTCTACATAGCCTTCTTCATCTTGGTCAGTCAAATCCTGTACAAATTATTAATTTTAATTCAAATGATATAATTTCCCAATTGGAAAGCTCCATGACTACTATGCGAGCACACGGTTCTTTTATTCTCTCCAAATAG 405 0.3827 MSQAQVANGIDFRCCGFCVDLEREMTRKKIEIKKIDNITARQVTFSKRRRGLFKKAKELATLCDAEIGLIVFSSTGKLYDYASSRLQFLSLHSLLHLGQSNPVQIINFNSNDIISQLESSMTTMRAHGSFILSK 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0617 134 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Acco03g0617 134 CDD MADS_MEF2_like 27 84 IPR033896 GO:0000977|GO:0045944
Acco03g0617 134 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Acco03g0617 134 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Acco03g0617 134 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Acco03g0617 134 Gene3D - 37 112 IPR036879 GO:0003677|GO:0046983
Acco03g0617 134 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677|GO:0046983
Acco03g0617 134 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Acco03g0617 134 SUPERFAMILY SRF-like 25 87 IPR036879 GO:0003677|GO:0046983
Acco03g0617 134 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677|GO:0046983
Acco03g0617 134 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0617 Acco-ChrAcco03 9079014 9080298 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0617 25 93 MADS-box Gene Family AT4G24540 65.753 2.00e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco03g0617 SRF-TF 1.2e-24 No_clan